Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0029
         (693 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83318-3|CAB05903.3|  231|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z81527-2|CAB04270.1|  361|Caenorhabditis elegans Hypothetical pr...    29   4.2  
Z93383-14|CAB07631.2|  279|Caenorhabditis elegans Hypothetical p...    28   5.5  
Z99272-1|CAI79171.1|  615|Caenorhabditis elegans Hypothetical pr...    27   9.6  
Z81113-9|CAI79237.1|  615|Caenorhabditis elegans Hypothetical pr...    27   9.6  

>Z83318-3|CAB05903.3|  231|Caenorhabditis elegans Hypothetical
           protein F55B11.3 protein.
          Length = 231

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = -3

Query: 340 YTIVFKKSFHFSKIGTSNIKIFCCILFH*ERIHEMSKILHYVQIILYHL 194
           Y ++ + S   S  G  + KIF C+L H   I  +  +L Y  +  Y L
Sbjct: 21  YDVLLETSMENSTCGEESHKIFMCLLPHYRYIESVFPVLEYKSLSDYKL 69


>Z81527-2|CAB04270.1|  361|Caenorhabditis elegans Hypothetical
           protein F35E12.2 protein.
          Length = 361

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 14/47 (29%), Positives = 26/47 (55%)
 Frame = +2

Query: 110 NRHPIDEYNPAPSVFYHPETSLRDPTFWKMIEYYLNVMKYFRHFMDP 250
           N+H ID+++ APS   H  T       + + E ++N+ K ++H + P
Sbjct: 99  NQH-IDQWSSAPSAILHINTISNTSQMFAIYE-FVNIAKKYQHVLIP 143


>Z93383-14|CAB07631.2|  279|Caenorhabditis elegans Hypothetical
           protein F54B8.12 protein.
          Length = 279

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 8/20 (40%), Positives = 16/20 (80%)
 Frame = +2

Query: 503 CSFNNCWERFEEFYELDIFN 562
           C+FN C++++ EF+E  +F+
Sbjct: 162 CTFNECYQKYWEFHEQVVFS 181


>Z99272-1|CAI79171.1|  615|Caenorhabditis elegans Hypothetical
           protein T03F6.8 protein.
          Length = 615

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 30/104 (28%), Positives = 47/104 (45%), Gaps = 5/104 (4%)
 Frame = +2

Query: 194 KMIEYYLNVMKYFRHFMDPFLMEEYTTEDFNITGANFTKM-----ETFFEYYRIPLNKIL 358
           K + + + + KYF   +  FLM  Y+T D +  G  F KM     E F  +   P N+  
Sbjct: 4   KTLFHGMRIRKYFAQIVRHFLMLLYSTID-SKAGITFYKMCCQSKECFSRFPFTPFNRFG 62

Query: 359 SAETGYISRKWPMFARQRRINHSPLTLNFTVDSKIDKNVIVRLF 490
           + ET     +   FAR   I+H    +  TV S +  +VI  ++
Sbjct: 63  TPETSQ-ELESGNFARS-DISHLDDFVRNTVVSLLFASVIYLIY 104


>Z81113-9|CAI79237.1|  615|Caenorhabditis elegans Hypothetical
           protein T03F6.8 protein.
          Length = 615

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 30/104 (28%), Positives = 47/104 (45%), Gaps = 5/104 (4%)
 Frame = +2

Query: 194 KMIEYYLNVMKYFRHFMDPFLMEEYTTEDFNITGANFTKM-----ETFFEYYRIPLNKIL 358
           K + + + + KYF   +  FLM  Y+T D +  G  F KM     E F  +   P N+  
Sbjct: 4   KTLFHGMRIRKYFAQIVRHFLMLLYSTID-SKAGITFYKMCCQSKECFSRFPFTPFNRFG 62

Query: 359 SAETGYISRKWPMFARQRRINHSPLTLNFTVDSKIDKNVIVRLF 490
           + ET     +   FAR   I+H    +  TV S +  +VI  ++
Sbjct: 63  TPETSQ-ELESGNFARS-DISHLDDFVRNTVVSLLFASVIYLIY 104


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,954,246
Number of Sequences: 27780
Number of extensions: 309892
Number of successful extensions: 905
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 905
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)