Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0028
         (559 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.09 |||zf-MYND type |Schizosaccharomyces pombe|chr 1|||M...    26   4.3  
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp...    25   7.5  
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ...    25   7.5  
SPBC31F10.12 |||RNA-binding protein Tma20 |Schizosaccharomyces p...    25   10.0 

>SPAC13G6.09 |||zf-MYND type |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 274

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +2

Query: 98  ACQSHFPKVWFNNAFRPKSAPN 163
           A  + FP +W NN   P S PN
Sbjct: 182 ATSNEFPGLWCNNECIPSSIPN 203


>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
           Spt6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1365

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = +1

Query: 223 SKYTKFGK*RKSSVAILV*CFGYXA*NFHY 312
           SKY+ F K RKSS+  LV  FG  A +F +
Sbjct: 442 SKYSFFEKFRKSSLYNLVKEFGMSAKDFSF 471


>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
           membrane transporter Hmt1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 830

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 10/38 (26%), Positives = 22/38 (57%)
 Frame = +3

Query: 237 IWQVTEVICRNFGIMLWILXLKFSLPFKYCLIMRTLCY 350
           ++Q+  V+  + G+ +    +KF + F   +++ TLCY
Sbjct: 382 VFQIGPVLL-DLGVAMVYFFIKFDIYFTLIVLIMTLCY 418


>SPBC31F10.12 |||RNA-binding protein Tma20 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 184

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -1

Query: 304 NFKXNIQSIIPKLRQMTSVTCQ 239
           N K  I  +IPK  Q+T + C+
Sbjct: 38  NLKQVIDELIPKKSQLTQIKCE 59


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,227,318
Number of Sequences: 5004
Number of extensions: 45813
Number of successful extensions: 108
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)