Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0028
         (559 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BX538010-1|CAD97960.1| 1183|Homo sapiens hypothetical protein pr...    31   2.1  
AJ001057-1|CAA04507.1| 1299|Homo sapiens NrCAM protein protein.        31   2.1  
AJ001054-1|CAA04504.1|  148|Homo sapiens NrCAM protein protein.        31   2.1  
AF172277-2|AAF22283.1| 1236|Homo sapiens NgCAM-related related c...    31   2.1  
AF172277-1|AAF22282.1| 1308|Homo sapiens NgCAM-related related c...    31   2.1  
BC007555-1|AAH07555.1|  372|Homo sapiens actin related protein 2...    29   8.4  
BC002988-1|AAH02988.2|  372|Homo sapiens actin related protein 2...    29   8.4  
BC002562-1|AAH02562.1|  372|Homo sapiens actin related protein 2...    29   8.4  
AF006084-1|AAB64189.1|  372|Homo sapiens p41-Arc protein.              29   8.4  

>BX538010-1|CAD97960.1| 1183|Homo sapiens hypothetical protein
           protein.
          Length = 1183

 Score = 31.5 bits (68), Expect = 2.1
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = -3

Query: 278 YTKIATDDFRYLPNFVYLEFQEPTWIVEQ 192
           YT +A +      N V+LE ++PTWIV+Q
Sbjct: 517 YTCVARNKLGMAKNEVHLEIKDPTWIVKQ 545


>AJ001057-1|CAA04507.1| 1299|Homo sapiens NrCAM protein protein.
          Length = 1299

 Score = 31.5 bits (68), Expect = 2.1
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = -3

Query: 278 YTKIATDDFRYLPNFVYLEFQEPTWIVEQ 192
           YT +A +      N V+LE ++PTWIV+Q
Sbjct: 518 YTCVARNKLGMAKNEVHLEIKDPTWIVKQ 546


>AJ001054-1|CAA04504.1|  148|Homo sapiens NrCAM protein protein.
          Length = 148

 Score = 31.5 bits (68), Expect = 2.1
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = -3

Query: 278 YTKIATDDFRYLPNFVYLEFQEPTWIVEQ 192
           YT +A +      N V+LE ++PTWIV+Q
Sbjct: 25  YTCVARNKLGMAKNEVHLEIKDPTWIVKQ 53


>AF172277-2|AAF22283.1| 1236|Homo sapiens NgCAM-related related cell
           adhesion molecule /alternative carboxyl terminus
           protein.
          Length = 1236

 Score = 31.5 bits (68), Expect = 2.1
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = -3

Query: 278 YTKIATDDFRYLPNFVYLEFQEPTWIVEQ 192
           YT +A +      N V+LE ++PTWIV+Q
Sbjct: 523 YTCVARNKLGMAKNEVHLEIKDPTWIVKQ 551


>AF172277-1|AAF22282.1| 1308|Homo sapiens NgCAM-related related cell
           adhesion molecule protein.
          Length = 1308

 Score = 31.5 bits (68), Expect = 2.1
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = -3

Query: 278 YTKIATDDFRYLPNFVYLEFQEPTWIVEQ 192
           YT +A +      N V+LE ++PTWIV+Q
Sbjct: 523 YTCVARNKLGMAKNEVHLEIKDPTWIVKQ 551


>BC007555-1|AAH07555.1|  372|Homo sapiens actin related protein 2/3
           complex, subunit 1B, 41kDa protein.
          Length = 372

 Score = 29.5 bits (63), Expect = 8.4
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 126 GSIMPSGQNPHQTGSCCGWVH 188
           GS MP G+   ++ S CGWVH
Sbjct: 186 GSKMPFGELMFESSSSCGWVH 206


>BC002988-1|AAH02988.2|  372|Homo sapiens actin related protein 2/3
           complex, subunit 1B, 41kDa protein.
          Length = 372

 Score = 29.5 bits (63), Expect = 8.4
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 126 GSIMPSGQNPHQTGSCCGWVH 188
           GS MP G+   ++ S CGWVH
Sbjct: 186 GSKMPFGELMFESSSSCGWVH 206


>BC002562-1|AAH02562.1|  372|Homo sapiens actin related protein 2/3
           complex, subunit 1B, 41kDa protein.
          Length = 372

 Score = 29.5 bits (63), Expect = 8.4
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 126 GSIMPSGQNPHQTGSCCGWVH 188
           GS MP G+   ++ S CGWVH
Sbjct: 186 GSKMPFGELMFESSSSCGWVH 206


>AF006084-1|AAB64189.1|  372|Homo sapiens p41-Arc protein.
          Length = 372

 Score = 29.5 bits (63), Expect = 8.4
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 126 GSIMPSGQNPHQTGSCCGWVH 188
           GS MP G+   ++ S CGWVH
Sbjct: 186 GSKMPFGELMFESSSSCGWVH 206


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,215,263
Number of Sequences: 237096
Number of extensions: 1586819
Number of successful extensions: 2455
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2373
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2455
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5590411794
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)