Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0028
         (559 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    24   0.91 
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   3.7  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    21   8.4  

>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 24.2 bits (50), Expect = 0.91
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +2

Query: 77  RNKHL*PACQSHFPKVWFNNAFRPKS 154
           R+K   P C   +P ++FN   R K+
Sbjct: 210 RHKKYYPCCDEPYPDIFFNITLRRKT 235


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = +3

Query: 87  TCNLLVNLIFQKSGSIMPSGQNPHQTGSCCGWVHLLFNNPRRFLEL 224
           T  LL  +I ++    + +G+NP  T      V +LF++   F E+
Sbjct: 391 TDELLYQMIPKQVADRLRNGENPIDTCEMFDSVSILFSDVVTFTEI 436


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 12/56 (21%), Positives = 23/56 (41%)
 Frame = +2

Query: 95  PACQSHFPKVWFNNAFRPKSAPNRVMLWVGAFVVQQST*VLGTPNIQNLASNGSHL 262
           P CQ+   K W+N      S   + +L       Q++  +L   + Q L  +  ++
Sbjct: 357 PVCQNEMNKWWWNMKISNLSFDKQSLLKENTVTCQEAMHMLKNADSQLLVISDDNI 412


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,369
Number of Sequences: 438
Number of extensions: 3480
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16072521
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)