Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0028
         (559 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g12400.1 68418.m01458 PHD finger transcription factor, putati...    31   0.69 
At1g35250.1 68414.m04371 thioesterase family protein contains Pf...    27   6.4  
At2g32390.1 68415.m03958 glutamate receptor family protein (GLR3...    27   8.5  

>At5g12400.1 68418.m01458 PHD finger transcription factor, putative
            similarity to predicted proteins, Arabidopsis thaliana
          Length = 1595

 Score = 30.7 bits (66), Expect = 0.69
 Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = -1

Query: 319  LKG-NENFKXNIQSIIPKLRQMTSVTCQILYIWSSKNLRGLLNNKCTHPQHDPVW 158
            L+G +E+   NIQS   K   + ++ CQIL + S   L+GLL     +PQH   W
Sbjct: 972  LRGLSESEVANIQSF-EKNSHLLAIICQILSLES--RLQGLLVGPWLNPQHSSFW 1023


>At1g35250.1 68414.m04371 thioesterase family protein contains Pfam
           profile PF03061: thioesterase family protein
          Length = 188

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +2

Query: 95  PACQSHFPKVWFNNAFRPKSAPNRVMLWVGAFVVQ 199
           P  ++    VW +N +RP   P+ V  + G F  Q
Sbjct: 150 PILEAKGTAVWLDNKYRPTRVPSHVRSYFGHFQCQ 184


>At2g32390.1 68415.m03958 glutamate receptor family protein (GLR3.5)
           plant glutamate receptor family, PMID:11379626
          Length = 895

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +3

Query: 198 NNPRRFLELQIYKIWQVTEVICRNFGIMLWILXLKFSLPFK 320
           ++P  FL+    ++W VT  +    G ++WIL  +F+  F+
Sbjct: 538 SSPWSFLKPFTIEMWAVTGALFLFVGAVIWILEHRFNEEFR 578


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,360,007
Number of Sequences: 28952
Number of extensions: 232914
Number of successful extensions: 429
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 421
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 429
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1062855648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)