Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0027
(309 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1 |Schiz... 130 6e-32
SPBC15C4.03 |||Rab geranylgeranyltransferase escort protein |Sch... 34 0.006
SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual 27 0.48
SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces pombe... 27 0.84
SPAC17H9.03c |rdl1||RAD51D-like protein 1|Schizosaccharomyces po... 26 1.1
SPAPB17E12.08 |||N-glycosylation protein |Schizosaccharomyces po... 26 1.5
SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c... 25 2.6
SPAC3F10.16c |||GTP binding protein, HSR1-related|Schizosaccharo... 25 2.6
SPBC776.12c |hsk1||serine/threonine protein kinase Hsk1|Schizosa... 25 3.4
SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit Cdc22|... 24 4.5
SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces... 24 5.9
SPBC2F12.14c |gua1||IMP dehydrogenase Gua1 |Schizosaccharomyces ... 24 5.9
SPAC4G9.17c |mrps5||mitochondrial ribosomal protein subunit S5|S... 23 7.9
SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei... 23 7.9
SPBC18E5.10 |||iron sulfur cluster assembly protein |Schizosacch... 23 7.9
>SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 440
Score = 130 bits (313), Expect = 6e-32
Identities = 64/103 (62%), Positives = 77/103 (74%), Gaps = 1/103 (0%)
Frame = +2
Query: 2 ILSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFAKFN-APAPDETYGRGRDWNVDLI 178
+LSG+LSV GKKVLHIDRN YYG +SAS+ L +L+A F E+ GR RDW VDL+
Sbjct: 18 VLSGLLSVDGKKVLHIDRNDYYGADSASLN-LTQLYALFRPGEQRPESLGRDRDWCVDLV 76
Query: 179 PKFLMANGLLVKLLIHTGVTRXLEFKSIEGSYVYKGGKICKVP 307
PKFLMANG L +LI+T VTR +EFK I GSYVY+ G+I KVP
Sbjct: 77 PKFLMANGDLTNILIYTDVTRYIEFKQIAGSYVYRDGRIAKVP 119
>SPBC15C4.03 |||Rab geranylgeranyltransferase escort protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 459
Score = 33.9 bits (74), Expect = 0.006
Identities = 15/30 (50%), Positives = 20/30 (66%)
Frame = +2
Query: 2 ILSGMLSVSGKKVLHIDRNKYYGGESASIT 91
ILS LS + ++VLHID N +YG S+T
Sbjct: 20 ILSAALSWANQRVLHIDENSFYGEIDGSLT 49
>SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 684
Score = 27.5 bits (58), Expect = 0.48
Identities = 15/57 (26%), Positives = 27/57 (47%)
Frame = +2
Query: 29 GKKVLHIDRNKYYGGESASITPLEELFAKFNAPAPDETYGRGRDWNVDLIPKFLMAN 199
GKK + +RN Y ++ PL K + P+ ++ + +D N D + L+ N
Sbjct: 2 GKKSVSFNRNNYKKRKNERTEPLPRRIFKNDKPSKFKSKRKEKDKNSDAYDEMLLNN 58
>SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 26.6 bits (56), Expect = 0.84
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +2
Query: 95 LEELFAKFNAPAPDETYGRGRDWNVDLIPKF 187
L L K A AP +TY + W +PKF
Sbjct: 32 LRSLIEKEEAAAPPKTYEDFKFWKTQPVPKF 62
>SPAC17H9.03c |rdl1||RAD51D-like protein 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 230
Score = 26.2 bits (55), Expect = 1.1
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = +3
Query: 18 CRFLGRRFCTSIAISTTVVNLRQL 89
CR L R+F ++ +ST++V ++QL
Sbjct: 116 CRILTRKFRLAVYLSTSLVYIKQL 139
>SPAPB17E12.08 |||N-glycosylation protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 166
Score = 25.8 bits (54), Expect = 1.5
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +2
Query: 125 PAPDETYGRGRDWNVDLIPKFLMANGLLVKLLIHTGV 235
P P + G + + V F++ANG L+K LIH +
Sbjct: 14 PRPAQALGINQPF-VSAYLSFVLANGFLLKWLIHYSI 49
>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 649
Score = 25.0 bits (52), Expect = 2.6
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +3
Query: 216 CLFTRASPGTWSLSPSKEVMFTKVEKS 296
C+F R S TWS+ S M ++ KS
Sbjct: 487 CVFIRTSMQTWSMFRSTHSMKQEIAKS 513
>SPAC3F10.16c |||GTP binding protein,
HSR1-related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 616
Score = 25.0 bits (52), Expect = 2.6
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +2
Query: 41 LHIDRNKYYGGESASITPLEELFAKFNAPAPD 136
L D N + A++ LE +F KF + PD
Sbjct: 266 LQADENDVHSSRIATLKVLEGIFEKFASTLPD 297
>SPBC776.12c |hsk1||serine/threonine protein kinase
Hsk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 507
Score = 24.6 bits (51), Expect = 3.4
Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Frame = +3
Query: 15 CCRFLGRRFCTSIAISTTV-VNLRQLPR*RSCSLSSTHRHLMKHTVEVETGTLT*FLSF* 191
C G F T+++ T VN R+L SC +S ++ ++H E FL
Sbjct: 354 CAALHGCTFETNVSTLTEKRVNFRKLILWASCGSASIYKEKLRHKPSQEERLCLDFLEKC 413
Query: 192 WLMDC 206
+DC
Sbjct: 414 LELDC 418
>SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit
Cdc22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 24.2 bits (50), Expect = 4.5
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = -1
Query: 219 SNLTSNPLAIRNLGIKSTFQSRPRPYVSSGAGALNL 112
SN+ P+ + G+ F + P+ S+GA LN+
Sbjct: 493 SNMRHRPVGLGVQGLADAFFALRLPFESAGAKKLNI 528
>SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 681
Score = 23.8 bits (49), Expect = 5.9
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -2
Query: 71 HRSTYCDRCAKPSSQKPT 18
H +T RCA+PSS++ T
Sbjct: 309 HPTTPVSRCARPSSRQQT 326
>SPBC2F12.14c |gua1||IMP dehydrogenase Gua1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 524
Score = 23.8 bits (49), Expect = 5.9
Identities = 14/51 (27%), Positives = 24/51 (47%)
Frame = -1
Query: 219 SNLTSNPLAIRNLGIKSTFQSRPRPYVSSGAGALNLANSSSNGVIDADSPP 67
+N++ RN+ +K+ F S P V+ A+ +A GVI + P
Sbjct: 54 NNVSLETRISRNIVLKTPFMSSPMDTVTEDQMAIYMALLGGIGVIHHNCTP 104
>SPAC4G9.17c |mrps5||mitochondrial ribosomal protein subunit
S5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 387
Score = 23.4 bits (48), Expect = 7.9
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -1
Query: 195 AIRNLGIKSTFQSRPRPYVSSGAGALNLANSSSNGVI 85
A R G+K + S+ YV+ G +L + SNG I
Sbjct: 138 APRQTGLKLNYVSKLDKYVTPLDGYSHLGSEESNGEI 174
>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 945
Score = 23.4 bits (48), Expect = 7.9
Identities = 7/14 (50%), Positives = 13/14 (92%)
Frame = -3
Query: 256 LKLQVPGDARVNKQ 215
+++Q+PGDA+ NK+
Sbjct: 299 IRIQLPGDAKENKE 312
>SPBC18E5.10 |||iron sulfur cluster assembly protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 23.4 bits (48), Expect = 7.9
Identities = 7/22 (31%), Positives = 16/22 (72%)
Frame = +2
Query: 80 ASITPLEELFAKFNAPAPDETY 145
A ++ L+++F+KFN P+ + +
Sbjct: 402 AHLSQLKDMFSKFNMPSSSKVF 423
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,290,666
Number of Sequences: 5004
Number of extensions: 23211
Number of successful extensions: 77
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 79841814
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -