Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0027
(309 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_1091 - 10015180-10015236,10015705-10015779,10015874-100161... 125 8e-30
05_04_0333 + 20333243-20333329,20335048-20335110,20335276-203353... 123 2e-29
03_02_0544 - 9362615-9362674,9362783-9362857,9362934-9363144,936... 123 3e-29
05_03_0407 + 13582595-13582681,13583067-13583129,13583289-135833... 122 6e-29
01_01_1165 - 9267891-9268145,9268395-9268510,9268991-9269127,926... 36 0.005
11_04_0455 + 17903921-17904046,17904149-17904214,17905028-179051... 27 2.3
08_01_0016 - 109152-109214,109296-109385,109853-109954,110046-11... 27 2.3
01_07_0051 - 40759529-40759624,40759728-40759835,40759972-407601... 27 3.0
03_06_0165 - 32108697-32109788 27 4.0
01_07_0052 - 40767252-40767347,40767455-40767562,40767689-407678... 27 4.0
11_04_0204 - 14844634-14844789,14844882-14845418,14846280-14846888 26 5.2
03_04_0212 + 18670122-18670326,18671946-18672385 26 5.2
01_06_0404 + 29098141-29098214,29098459-29098673,29099491-290995... 26 5.2
08_01_0776 + 7533790-7533984,7534234-7534419,7534542-7534631,753... 26 6.9
07_03_0335 - 16903775-16904118,16904203-16904325,16904424-16905993 26 6.9
07_01_0161 + 1132505-1132704,1132839-1134075 26 6.9
02_04_0046 + 19211961-19212231,19212651-19212706,19212947-192130... 26 6.9
12_02_0425 - 18954427-18955020,18955330-18955350,18956380-18956490 25 9.2
11_05_0009 - 18349593-18350477 25 9.2
10_08_1008 - 22222051-22222377,22222479-22222640,22223179-222233... 25 9.2
10_08_0843 - 20960249-20960446,20960583-20960987,20961092-209612... 25 9.2
10_08_0756 + 20344406-20344590,20345811-20345880,20346229-203462... 25 9.2
08_01_0699 - 6163662-6163680,6163865-6163943,6163979-6164048,616... 25 9.2
07_01_0162 + 1138420-1138640,1138788-1138830,1139449-1140971,114... 25 9.2
04_04_1143 + 31202901-31203034,31203312-31203345,31203913-312039... 25 9.2
02_04_0415 + 22706964-22707072,22707784-22708077,22708304-227084... 25 9.2
02_03_0059 + 14539028-14539100,14539488-14539834 25 9.2
>07_01_1091 -
10015180-10015236,10015705-10015779,10015874-10016149,
10016204-10016332,10017070-10017171,10017626-10017688,
10017776-10017856,10018218-10018314,10019064-10019236,
10019327-10019434,10019706-10019789,10019985-10020047,
10020483-10020569
Length = 464
Score = 125 bits (301), Expect = 8e-30
Identities = 60/103 (58%), Positives = 77/103 (74%), Gaps = 1/103 (0%)
Frame = +2
Query: 2 ILSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFAKFNAPA-PDETYGRGRDWNVDLI 178
ILSG+LSV KVLH+DRN YYGG+S S+ L +L+ +F P G RD+NVD+I
Sbjct: 18 ILSGLLSVDRLKVLHMDRNDYYGGDSTSLN-LNQLWKRFKGEGTPPAQIGASRDYNVDMI 76
Query: 179 PKFLMANGLLVKLLIHTGVTRXLEFKSIEGSYVYKGGKICKVP 307
PKF+MANG LV++LIHTGVT+ L FK+++GSYV+ GKI KVP
Sbjct: 77 PKFMMANGTLVRVLIHTGVTKYLSFKAVDGSYVFNKGKIHKVP 119
>05_04_0333 +
20333243-20333329,20335048-20335110,20335276-20335359,
20335720-20335827,20335969-20336141,20337135-20337246,
20337468-20337548,20337635-20337697,20337779-20337880,
20338070-20338194,20338317-20338527,20338625-20338699,
20338990-20339043
Length = 445
Score = 123 bits (297), Expect = 2e-29
Identities = 59/103 (57%), Positives = 76/103 (73%), Gaps = 1/103 (0%)
Frame = +2
Query: 2 ILSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFAKFNAP-APDETYGRGRDWNVDLI 178
ILSG+LSV G KVLH+DRN YYGG+S S+ L +L+ +F P G RD+NVD++
Sbjct: 18 ILSGLLSVDGLKVLHMDRNDYYGGDSTSLN-LNQLWKRFRGEDKPPAHLGASRDYNVDMV 76
Query: 179 PKFLMANGLLVKLLIHTGVTRXLEFKSIEGSYVYKGGKICKVP 307
PKF+MANG LV+ LIHT VT+ L FK+++GSYV+ GKI KVP
Sbjct: 77 PKFMMANGTLVRTLIHTDVTKYLSFKAVDGSYVFSKGKIHKVP 119
>03_02_0544 -
9362615-9362674,9362783-9362857,9362934-9363144,
9363279-9363403,9363492-9363593,9363676-9363738,
9363817-9363897,9364248-9364359,9364454-9364626,
9364722-9364829,9364909-9364992,9365131-9365193,
9365652-9365738
Length = 447
Score = 123 bits (296), Expect = 3e-29
Identities = 60/104 (57%), Positives = 80/104 (76%), Gaps = 2/104 (1%)
Frame = +2
Query: 2 ILSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFAKF--NAPAPDETYGRGRDWNVDL 175
I+SG+LSV G KVLH+DRN YYGGES S+ L +L+ +F N AP E G +++NVD+
Sbjct: 18 IISGLLSVDGLKVLHMDRNDYYGGESTSLN-LTKLWKRFKGNETAP-EHLGVSKEYNVDM 75
Query: 176 IPKFLMANGLLVKLLIHTGVTRXLEFKSIEGSYVYKGGKICKVP 307
+PKF+MANG LV++LIHT VT+ L FK+++GS+VY GKI KVP
Sbjct: 76 VPKFMMANGALVRVLIHTSVTKYLNFKAVDGSFVYNNGKIHKVP 119
>05_03_0407 +
13582595-13582681,13583067-13583129,13583289-13583372,
13583757-13583864,13584018-13584190,13585190-13585301,
13585424-13585504,13585611-13585673,13585764-13585865,
13586063-13586187,13586316-13586526,13586614-13586688,
13586950-13587003
Length = 445
Score = 122 bits (294), Expect = 6e-29
Identities = 58/103 (56%), Positives = 76/103 (73%), Gaps = 1/103 (0%)
Frame = +2
Query: 2 ILSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFAKFNAP-APDETYGRGRDWNVDLI 178
ILSG+LSV G KVLH+DRN YYGG+S S+ L +L+ +F P G +D+NVD++
Sbjct: 18 ILSGLLSVDGLKVLHMDRNDYYGGDSTSLN-LNQLWKRFRGEDKPPAHLGSSKDYNVDMV 76
Query: 179 PKFLMANGLLVKLLIHTGVTRXLEFKSIEGSYVYKGGKICKVP 307
PKF+MANG LV+ LIHT VT+ L FK+++GSYV+ GKI KVP
Sbjct: 77 PKFMMANGTLVRTLIHTDVTKYLSFKAVDGSYVFSKGKIHKVP 119
>01_01_1165 -
9267891-9268145,9268395-9268510,9268991-9269127,
9269645-9269808,9269892-9269972,9270783-9270962,
9271489-9271929,9273234-9273344,9274355-9274463,
9274618-9274643,9274823-9274903,9275013-9275211,
9275374-9275449,9275553-9275769,9276117-9276155,
9276684-9276783,9276962-9277084,9277171-9277895
Length = 1059
Score = 36.3 bits (80), Expect = 0.005
Identities = 39/133 (29%), Positives = 61/133 (45%), Gaps = 31/133 (23%)
Frame = +2
Query: 2 ILSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFAKFN-------APAPD-------- 136
+L+ + +GK VLH+D N +YG +S+ PL L + + AP+P
Sbjct: 37 VLAAACAAAGKTVLHVDPNPFYGSLFSSL-PLPSLPSFLSPSPSDDPAPSPSPSSAAAVD 95
Query: 137 ----------ETYGR----GRDWNVDLI-PKFLMANGLLVKLLIHTGVTRXLEFKSIE-G 268
ET G R + DL+ P+ L V LL+ +G + +EFKS+E G
Sbjct: 96 LRRRSPYSEVETSGAVPEPSRRFTADLVGPRLLYCADEAVDLLLRSGGSHHVEFKSVEGG 155
Query: 269 SYVYKGGKICKVP 307
+ +Y G + VP
Sbjct: 156 TLLYWDGDLYPVP 168
>11_04_0455 +
17903921-17904046,17904149-17904214,17905028-17905116,
17905513-17905658,17905743-17905867,17905964-17906057,
17906144-17906307,17906449-17906610,17906683-17906809,
17906854-17906862,17906912-17907078,17907113-17907307,
17907398-17907490
Length = 520
Score = 27.5 bits (58), Expect = 2.3
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +2
Query: 68 GGESASITPLEELFAKFNAPAPDETYGRGRDWNVDLIPKFLMANGLLV 211
GG + T LEEL A+F +G G N +IP + GL++
Sbjct: 142 GGTTKLHTELEELVARFVGKPAAILFGMGYVTNSAIIPCLVGKGGLII 189
>08_01_0016 -
109152-109214,109296-109385,109853-109954,110046-110213,
110510-110530,110836-110896,110987-111099,112125-112202,
112294-112434,112532-112696,112776-112868,113096-113162,
113285-113388,113896-114041,114303-114579
Length = 562
Score = 27.5 bits (58), Expect = 2.3
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +2
Query: 5 LSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFAKFNAPAP 133
L G+L + KK+ H N+ G AS+ LE+L P P
Sbjct: 101 LGGLLILLPKKLNHEPNNEDKGQVKASLAELEQLLLHQQVPYP 143
>01_07_0051 -
40759529-40759624,40759728-40759835,40759972-40760138,
40760670-40760796,40760885-40761046,40761235-40761398,
40761561-40761654,40761736-40761860,40762304-40762449,
40762796-40762884,40763453-40763518,40763824-40763973
Length = 497
Score = 27.1 bits (57), Expect = 3.0
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = +2
Query: 68 GGESASITPLEELFAKFNAPAPDETYGRGRDWNVDLIPKFLMANGLLV 211
GG + LEEL A+F +G G N +IP + GL++
Sbjct: 150 GGNTKLHVELEELVARFVGKPAAILFGMGYVTNSAIIPALIGKGGLII 197
>03_06_0165 - 32108697-32109788
Length = 363
Score = 26.6 bits (56), Expect = 4.0
Identities = 13/54 (24%), Positives = 27/54 (50%)
Frame = +2
Query: 38 VLHIDRNKYYGGESASITPLEELFAKFNAPAPDETYGRGRDWNVDLIPKFLMAN 199
++ ID + E + P+EE + P P + + R++ V L P+F++ +
Sbjct: 158 IMDIDPTYWCSSEVLAYDPVEECWCW--GPLPQPPFFQDREYKVPLKPRFMVVD 209
>01_07_0052 -
40767252-40767347,40767455-40767562,40767689-40767855,
40767930-40768056,40768138-40768299,40768467-40768630,
40768722-40768815,40768892-40769016,40769110-40769255,
40769361-40769449,40769564-40769608,40770165-40770230,
40770332-40770457
Length = 504
Score = 26.6 bits (56), Expect = 4.0
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = +2
Query: 68 GGESASITPLEELFAKFNAPAPDETYGRGRDWNVDLIPKFLMANGLLV 211
GG + LEEL A+F +G G N +IP + GL++
Sbjct: 157 GGNTKLHVELEELVARFVGKPAAILFGMGYVTNSAIIPALVGKGGLII 204
>11_04_0204 - 14844634-14844789,14844882-14845418,14846280-14846888
Length = 433
Score = 26.2 bits (55), Expect = 5.2
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +2
Query: 158 DWNVDLIPKFLMANGLLVKLLIHTGVTRXLEFK 256
DW V P ++ +G LLIH GV EF+
Sbjct: 92 DWGVGAGPDLIVDDGGDATLLIHEGVKAEEEFE 124
>03_04_0212 + 18670122-18670326,18671946-18672385
Length = 214
Score = 26.2 bits (55), Expect = 5.2
Identities = 16/43 (37%), Positives = 19/43 (44%)
Frame = +2
Query: 26 SGKKVLHIDRNKYYGGESASITPLEELFAKFNAPAPDETYGRG 154
SG +VLH KY + TP EE F P YG+G
Sbjct: 68 SGDEVLH----KYTTPTATPSTPKEERFCIMGVRIPSGRYGKG 106
>01_06_0404 +
29098141-29098214,29098459-29098673,29099491-29099596,
29099686-29100235,29100332-29100429,29100519-29100764,
29100867-29100981,29101092-29101305,29101402-29101991
Length = 735
Score = 26.2 bits (55), Expect = 5.2
Identities = 18/57 (31%), Positives = 28/57 (49%)
Frame = -3
Query: 307 RYFADFSTFVNITSFDGLKLQVPGDARVNKQFD*QSISHQKLRNQVNVPVSTSTVCF 137
R F + TF +TS +K Q ++ + Q ++ + K N NVP ST+CF
Sbjct: 297 RDFPAYVTFGGVTSSMTIKGQSLSNSTL-PQGQRYAMINAKNANAANVPSENSTLCF 352
>08_01_0776 +
7533790-7533984,7534234-7534419,7534542-7534631,
7535284-7535368,7535759-7535925,7536250-7536438,
7537183-7537296,7537391-7537510,7537590-7537712,
7538217-7538315,7538735-7538791,7539272-7539318,
7539391-7539534,7540028-7540205,7540663-7540743,
7540926-7541009,7541416-7541616
Length = 719
Score = 25.8 bits (54), Expect = 6.9
Identities = 11/40 (27%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = +3
Query: 192 WLMDC*SNCLFTRASP--GTWSLSPSKEVMFTKVEKSAKY 305
WL +C S+CL++ P W +S ++ ++ + KY
Sbjct: 250 WLQECLSDCLYSFGEPFLTRWPISYMRKRALYQIAEFLKY 289
>07_03_0335 - 16903775-16904118,16904203-16904325,16904424-16905993
Length = 678
Score = 25.8 bits (54), Expect = 6.9
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +2
Query: 44 HIDRNKYYGGESASITPLEELFAKFNAPAP 133
+IDRN G S S+ +EEL +KFN P
Sbjct: 227 YIDRNLIDFGSSDSLPKIEEL-SKFNVQIP 255
>07_01_0161 + 1132505-1132704,1132839-1134075
Length = 478
Score = 25.8 bits (54), Expect = 6.9
Identities = 8/11 (72%), Positives = 10/11 (90%)
Frame = -2
Query: 86 LTQIHHRSTYC 54
LTQ+HHR+ YC
Sbjct: 335 LTQVHHRALYC 345
>02_04_0046 +
19211961-19212231,19212651-19212706,19212947-19213011,
19213138-19213212,19213305-19213383,19213591-19213629,
19213712-19213820,19214334-19214452,19215282-19215401,
19215846-19216232
Length = 439
Score = 25.8 bits (54), Expect = 6.9
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = -2
Query: 98 LTG*LTQIHHRSTYCDRCAKPSSQKPTTCR 9
L G LT HH + C RC P+ C+
Sbjct: 192 LEGQLTVYHHNGSPCYRCLFPNPPPVAACQ 221
>12_02_0425 - 18954427-18955020,18955330-18955350,18956380-18956490
Length = 241
Score = 25.4 bits (53), Expect = 9.2
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +3
Query: 45 TSIAISTTVVNLRQLPR*RSCSLSSTHRHL 134
+ I + T+ PR RSC++ T +HL
Sbjct: 36 SKILLGLTLAQFSSFPRGRSCNIMLTPKHL 65
>11_05_0009 - 18349593-18350477
Length = 294
Score = 25.4 bits (53), Expect = 9.2
Identities = 16/50 (32%), Positives = 22/50 (44%)
Frame = +2
Query: 14 MLSVSGKKVLHIDRNKYYGGESASITPLEELFAKFNAPAPDETYGRGRDW 163
+ + +G +VLH KY + TP EE F P YG+G W
Sbjct: 138 LFTKAGDEVLH----KYVTPTATPSTPKEERFRIQGLRTPGGGYGKGLLW 183
>10_08_1008 -
22222051-22222377,22222479-22222640,22223179-22223310,
22224556-22224608,22224713-22225256
Length = 405
Score = 25.4 bits (53), Expect = 9.2
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Frame = -1
Query: 162 QSRPRPYVSSGAGALNLA--NSSSNGVIDADSPP 67
+ RPR Y G+ AL LA +S+S G PP
Sbjct: 112 RGRPRKYAPDGSMALALAPISSASGGAAPPPPPP 145
>10_08_0843 -
20960249-20960446,20960583-20960987,20961092-20961232,
20961324-20961471,20961742-20961863,20962372-20962412,
20962671-20962839
Length = 407
Score = 25.4 bits (53), Expect = 9.2
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = +2
Query: 38 VLHIDRNKYYGGESASITPLEELFAKFNAPAPD 136
VLH DR+K + S+TPL +LF P+PD
Sbjct: 116 VLH-DRDKKVE-TTQSVTPLSQLFKIDTPPSPD 146
>10_08_0756 +
20344406-20344590,20345811-20345880,20346229-20346291,
20348390-20348521,20348604-20348737,20351245-20351323,
20353050-20353111,20353211-20353310,20353448-20353489,
20353605-20353646,20353959-20354150
Length = 366
Score = 25.4 bits (53), Expect = 9.2
Identities = 17/52 (32%), Positives = 22/52 (42%)
Frame = +2
Query: 53 RNKYYGGESASITPLEELFAKFNAPAPDETYGRGRDWNVDLIPKFLMANGLL 208
R + Y SA T + L AP P G R+W DL KFL ++
Sbjct: 51 RGRLYEFASAPSTRIVYLTPSSLAPTPA---GEWREWREDLSRKFLSLQAMI 99
>08_01_0699 -
6163662-6163680,6163865-6163943,6163979-6164048,
6164151-6164266,6164656-6164734,6164831-6164921,
6165006-6165084,6165161-6165248,6165371-6165454,
6165544-6165591,6166118-6166192,6166286-6166362,
6166460-6166548,6166711-6166749,6167133-6167206,
6167496-6167588,6167820-6167917,6168100-6168172,
6168322-6168406,6168513-6168634,6169307-6169414,
6169537-6169608
Length = 585
Score = 25.4 bits (53), Expect = 9.2
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Frame = +2
Query: 47 IDRNKYYGGE---SASITPLEELFAKFNAPAP 133
I R+K Y G SAS++ L L KF+ PAP
Sbjct: 237 IARSKSYHGSTLVSASLSGLPALHQKFDLPAP 268
>07_01_0162 + 1138420-1138640,1138788-1138830,1139449-1140971,
1141770-1142063,1142145-1142337,1142624-1142694,
1142781-1144200
Length = 1254
Score = 25.4 bits (53), Expect = 9.2
Identities = 8/11 (72%), Positives = 10/11 (90%)
Frame = -2
Query: 86 LTQIHHRSTYC 54
LTQ+HHR+ YC
Sbjct: 1048 LTQVHHRAFYC 1058
>04_04_1143 +
31202901-31203034,31203312-31203345,31203913-31203985,
31204090-31204187,31204356-31204448,31205081-31205154,
31205680-31205768,31205859-31205935,31206016-31206090,
31206438-31206485,31206571-31206654,31206734-31206821,
31206896-31206974,31207072-31207162,31207724-31207802,
31208219-31208334,31208430-31208488,31210292-31210342,
31211418-31211444,31211725-31211809,31211952-31212024,
31212154-31212251,31212385-31212477,31212972-31213045,
31213258-31213296,31213410-31213498,31213583-31213707,
31213750-31213824,31214225-31214272,31214359-31214442,
31214574-31214661,31214762-31214840,31214930-31215020,
31215113-31215191,31215485-31215600,31215910-31215987
Length = 960
Score = 25.4 bits (53), Expect = 9.2
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Frame = +2
Query: 47 IDRNKYYGGE---SASITPLEELFAKFNAPAP 133
I R+K Y G SAS++ L L KF+ PAP
Sbjct: 626 IARSKSYHGSTLISASLSGLPALHQKFDLPAP 657
>02_04_0415 +
22706964-22707072,22707784-22708077,22708304-22708416,
22708504-22709002,22709106-22709144,22709228-22709515,
22709766-22709905,22710468-22710960,22711082-22711356
Length = 749
Score = 25.4 bits (53), Expect = 9.2
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 53 RNKYYGGESASITPLEELFAKFNAPA 130
R YY G + I P+E +FA + APA
Sbjct: 142 RVPYYDG-TLPILPVESVFANYKAPA 166
>02_03_0059 + 14539028-14539100,14539488-14539834
Length = 139
Score = 25.4 bits (53), Expect = 9.2
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = +2
Query: 26 SGKKVLHIDRNKYYGGESASITPLEELFAKFNAPAPDETYGRG 154
+G +VLH KY + TP EE F P YG+G
Sbjct: 32 AGDEVLH----KYVTPTATPSTPKEERFCIMGVRTPSGGYGKG 70
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,456,003
Number of Sequences: 37544
Number of extensions: 154132
Number of successful extensions: 509
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 505
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 375959444
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -