Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0027
         (309 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30272| Best HMM Match : GDI (HMM E-Value=0)                        134   1e-32
SB_2490| Best HMM Match : No HMM Matches (HMM E-Value=.)               99   4e-22
SB_16877| Best HMM Match : Mito_carr (HMM E-Value=0)                   41   2e-04
SB_1949| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   0.33 
SB_14837| Best HMM Match : UCH (HMM E-Value=1.10002e-42)               27   3.1  
SB_32383| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.2  
SB_36955| Best HMM Match : LISCH7 (HMM E-Value=9.8)                    25   9.5  
SB_8666| Best HMM Match : Flagellar_rod (HMM E-Value=2.5)              25   9.5  
SB_3043| Best HMM Match : No HMM Matches (HMM E-Value=.)               25   9.5  

>SB_30272| Best HMM Match : GDI (HMM E-Value=0)
          Length = 1199

 Score =  134 bits (325), Expect = 1e-32
 Identities = 62/104 (59%), Positives = 83/104 (79%), Gaps = 2/104 (1%)
 Frame = +2

Query: 2   ILSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFAKF-NAPAPDETYGRGRDWNVDLI 178
           +LSG+LS++ KKVLH+DRNKYYGG+ AS+ PL +L+  F     P ++ G+ RD+NVDLI
Sbjct: 18  VLSGLLSLNKKKVLHMDRNKYYGGDCASLHPLNQLYETFGRTDFPGDSLGKPRDYNVDLI 77

Query: 179 PKFLMANGLLVKLLIHTGV-TRXLEFKSIEGSYVYKGGKICKVP 307
           PKFLMA+G LVK+L+HTGV T+ + FK IEGS+VY+GG + KVP
Sbjct: 78  PKFLMADGTLVKILVHTGVATKYMNFKQIEGSFVYRGGSVHKVP 121


>SB_2490| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 97

 Score =   99 bits (238), Expect = 4e-22
 Identities = 46/72 (63%), Positives = 56/72 (77%), Gaps = 4/72 (5%)
 Frame = +2

Query: 2   ILSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFAKFNAPAPDE----TYGRGRDWNV 169
           ILSG LSV+GKKVLH+D  K+YGGE+AS+TPL +LF KFN   P E     +GR RDWNV
Sbjct: 21  ILSGALSVAGKKVLHMDSQKFYGGETASLTPLSQLFDKFNRSMPKEEIEKRFGRERDWNV 80

Query: 170 DLIPKFLMANGL 205
           DL+PKF+MA G+
Sbjct: 81  DLVPKFIMAGGI 92


>SB_16877| Best HMM Match : Mito_carr (HMM E-Value=0)
          Length = 1024

 Score = 40.7 bits (91), Expect = 2e-04
 Identities = 18/51 (35%), Positives = 29/51 (56%)
 Frame = +2

Query: 155 RDWNVDLIPKFLMANGLLVKLLIHTGVTRXLEFKSIEGSYVYKGGKICKVP 307
           R +N+DL PK L++ G LV+ LI   ++   EFK++     +  G +  VP
Sbjct: 323 RQFNIDLAPKLLLSRGALVESLISANISHYAEFKAVNQILTFLEGSMEAVP 373



 Score = 34.7 bits (76), Expect = 0.016
 Identities = 15/30 (50%), Positives = 20/30 (66%)
 Frame = +2

Query: 2   ILSGMLSVSGKKVLHIDRNKYYGGESASIT 91
           +++  LS  G KVLH+DRN YY  + AS T
Sbjct: 21  VVAAALSRIGLKVLHLDRNDYYSSQWASFT 50


>SB_1949| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 528

 Score = 30.3 bits (65), Expect = 0.33
 Identities = 15/51 (29%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
 Frame = -2

Query: 179 ESSQRSSLDLDRMFHQV-PVR*T*RTAPLTG*LTQIHHRSTYCDRCAKPSS 30
           +++Q +  D+D    +  P++ T   +P TG  + +H ++T  DR A+P+S
Sbjct: 260 DNTQANVTDIDEAIAKARPIKITEDASPTTG-TSGVHQKATVIDRAARPAS 309


>SB_14837| Best HMM Match : UCH (HMM E-Value=1.10002e-42)
          Length = 1712

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +3

Query: 210 SNCLFTRASPGTWSLSPSKEVMFTKVEKSAKYL 308
           SNC+ T+ S  T  L P+K+V+  +  +  K L
Sbjct: 693 SNCINTKDSDQTTKLRPNKDVIMDEPHRDPKQL 725


>SB_32383| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1850

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +2

Query: 56  NKYYGGESASITPLEELFAKFNAPAPDETYGRGRDWNVDLIPKFL 190
           NK+Y  E   +     L +K  APAP +   + + + + + PKF+
Sbjct: 352 NKFYPTEVKDLDDPSSLMSKLIAPAPGDKPQKAK-YTIHVKPKFV 395


>SB_36955| Best HMM Match : LISCH7 (HMM E-Value=9.8)
          Length = 160

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 204 NPLAIRNLGIKSTFQSRPRPYVS 136
           N    RN  I   F+++PRPY+S
Sbjct: 115 NMWGARNRDINKKFEAQPRPYLS 137


>SB_8666| Best HMM Match : Flagellar_rod (HMM E-Value=2.5)
          Length = 895

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +2

Query: 95  LEELFAKFNAPAPDETYGRGRDWNVDLIPK 184
           LEEL  + + P+P++T+G   D+ + L  K
Sbjct: 114 LEELAQEMHRPSPEDTFGLSPDFIMILSSK 143


>SB_3043| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 777

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -2

Query: 104 APLTG*LTQIHHRSTYCDRCAKPSSQKPTTCRL 6
           AP +  L + HHRS +      PS + PT+ RL
Sbjct: 486 APKSFRLYKPHHRSVFTSPTIVPSLRAPTSFRL 518


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,752,963
Number of Sequences: 59808
Number of extensions: 173084
Number of successful extensions: 398
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 395
length of database: 16,821,457
effective HSP length: 71
effective length of database: 12,575,089
effective search space used: 389827759
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)