Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0027
(309 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z99281-33|CAJ44242.1| 459|Caenorhabditis elegans Hypothetical p... 172 4e-44
Z99281-32|CAB16511.1| 444|Caenorhabditis elegans Hypothetical p... 172 4e-44
U00002-1|AAA17051.1| 444|Caenorhabditis elegans rabGDI protein. 172 4e-44
AC091125-8|AAP46267.1| 353|Caenorhabditis elegans Hypothetical ... 37 0.003
AC091125-7|AAK27890.1| 510|Caenorhabditis elegans Hypothetical ... 37 0.003
Z83232-3|CAE46672.1| 381|Caenorhabditis elegans Hypothetical pr... 26 4.7
Z83232-2|CAB05754.2| 420|Caenorhabditis elegans Hypothetical pr... 26 4.7
Z81531-8|CAB04322.2| 344|Caenorhabditis elegans Hypothetical pr... 26 6.2
AF067608-9|AAC17652.1| 367|Caenorhabditis elegans Temporarily a... 26 6.2
Z92786-2|CAB07211.1| 518|Caenorhabditis elegans Hypothetical pr... 25 8.1
Z74040-1|CAA98514.2| 340|Caenorhabditis elegans Hypothetical pr... 25 8.1
L14324-3|AAA28185.1| 851|Caenorhabditis elegans Abnormal nucleo... 25 8.1
AF047027-1|AAC14263.1| 851|Caenorhabditis elegans B box zinc fi... 25 8.1
>Z99281-33|CAJ44242.1| 459|Caenorhabditis elegans Hypothetical
protein Y57G11C.10b protein.
Length = 459
Score = 172 bits (419), Expect = 4e-44
Identities = 83/104 (79%), Positives = 90/104 (86%), Gaps = 2/104 (1%)
Frame = +2
Query: 2 ILSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFAKFNAPA--PDETYGRGRDWNVDL 175
I+SGMLSVSGKKVLHIDRN YYGGESAS+TPLE+L+ KF+ P P + GRGRDWNVDL
Sbjct: 18 IISGMLSVSGKKVLHIDRNNYYGGESASLTPLEQLYEKFHGPQAKPQQEMGRGRDWNVDL 77
Query: 176 IPKFLMANGLLVKLLIHTGVTRXLEFKSIEGSYVYKGGKICKVP 307
IPKFLMANG LVKLLIHTGVTR LEFKSIE S+V KGGKI KVP
Sbjct: 78 IPKFLMANGPLVKLLIHTGVTRYLEFKSIEASFVVKGGKIYKVP 121
>Z99281-32|CAB16511.1| 444|Caenorhabditis elegans Hypothetical
protein Y57G11C.10a protein.
Length = 444
Score = 172 bits (419), Expect = 4e-44
Identities = 83/104 (79%), Positives = 90/104 (86%), Gaps = 2/104 (1%)
Frame = +2
Query: 2 ILSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFAKFNAPA--PDETYGRGRDWNVDL 175
I+SGMLSVSGKKVLHIDRN YYGGESAS+TPLE+L+ KF+ P P + GRGRDWNVDL
Sbjct: 18 IISGMLSVSGKKVLHIDRNNYYGGESASLTPLEQLYEKFHGPQAKPQQEMGRGRDWNVDL 77
Query: 176 IPKFLMANGLLVKLLIHTGVTRXLEFKSIEGSYVYKGGKICKVP 307
IPKFLMANG LVKLLIHTGVTR LEFKSIE S+V KGGKI KVP
Sbjct: 78 IPKFLMANGPLVKLLIHTGVTRYLEFKSIEASFVVKGGKIYKVP 121
>U00002-1|AAA17051.1| 444|Caenorhabditis elegans rabGDI protein.
Length = 444
Score = 172 bits (419), Expect = 4e-44
Identities = 83/104 (79%), Positives = 90/104 (86%), Gaps = 2/104 (1%)
Frame = +2
Query: 2 ILSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFAKFNAPA--PDETYGRGRDWNVDL 175
I+SGMLSVSGKKVLHIDRN YYGGESAS+TPLE+L+ KF+ P P + GRGRDWNVDL
Sbjct: 18 IISGMLSVSGKKVLHIDRNNYYGGESASLTPLEQLYEKFHGPQAKPQQEMGRGRDWNVDL 77
Query: 176 IPKFLMANGLLVKLLIHTGVTRXLEFKSIEGSYVYKGGKICKVP 307
IPKFLMANG LVKLLIHTGVTR LEFKSIE S+V KGGKI KVP
Sbjct: 78 IPKFLMANGPLVKLLIHTGVTRYLEFKSIEASFVVKGGKIYKVP 121
>AC091125-8|AAP46267.1| 353|Caenorhabditis elegans Hypothetical
protein Y67D2.1b protein.
Length = 353
Score = 36.7 bits (81), Expect = 0.003
Identities = 15/30 (50%), Positives = 22/30 (73%)
Frame = +2
Query: 2 ILSGMLSVSGKKVLHIDRNKYYGGESASIT 91
IL+ + +G VLH+DRN+YYGG+ +S T
Sbjct: 22 ILASACARAGLSVLHLDRNEYYGGDWSSFT 51
Score = 33.1 bits (72), Expect = 0.041
Identities = 13/36 (36%), Positives = 24/36 (66%)
Frame = +2
Query: 155 RDWNVDLIPKFLMANGLLVKLLIHTGVTRXLEFKSI 262
R +++DL+PK L++ G +V+ L + V+ EFK +
Sbjct: 122 RRFSIDLVPKILLSKGAMVQTLCDSQVSHYAEFKLV 157
>AC091125-7|AAK27890.1| 510|Caenorhabditis elegans Hypothetical
protein Y67D2.1a protein.
Length = 510
Score = 36.7 bits (81), Expect = 0.003
Identities = 15/30 (50%), Positives = 22/30 (73%)
Frame = +2
Query: 2 ILSGMLSVSGKKVLHIDRNKYYGGESASIT 91
IL+ + +G VLH+DRN+YYGG+ +S T
Sbjct: 22 ILASACARAGLSVLHLDRNEYYGGDWSSFT 51
Score = 33.1 bits (72), Expect = 0.041
Identities = 13/36 (36%), Positives = 24/36 (66%)
Frame = +2
Query: 155 RDWNVDLIPKFLMANGLLVKLLIHTGVTRXLEFKSI 262
R +++DL+PK L++ G +V+ L + V+ EFK +
Sbjct: 122 RRFSIDLVPKILLSKGAMVQTLCDSQVSHYAEFKLV 157
>Z83232-3|CAE46672.1| 381|Caenorhabditis elegans Hypothetical
protein K04B12.2b protein.
Length = 381
Score = 26.2 bits (55), Expect = 4.7
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -1
Query: 177 IKSTFQSRPRPYVSSGAGALNLANSSSNGVIDADS 73
IK+ R V +G+ +LN+ +SSS+ +DS
Sbjct: 38 IKNLINERVSEAVQAGSSSLNMPSSSSSSCTSSDS 72
>Z83232-2|CAB05754.2| 420|Caenorhabditis elegans Hypothetical
protein K04B12.2a protein.
Length = 420
Score = 26.2 bits (55), Expect = 4.7
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -1
Query: 177 IKSTFQSRPRPYVSSGAGALNLANSSSNGVIDADS 73
IK+ R V +G+ +LN+ +SSS+ +DS
Sbjct: 77 IKNLINERVSEAVQAGSSSLNMPSSSSSSCTSSDS 111
>Z81531-8|CAB04322.2| 344|Caenorhabditis elegans Hypothetical
protein F36D3.9 protein.
Length = 344
Score = 25.8 bits (54), Expect = 6.2
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 113 KFNAPAPDETYGRGRDWNVDLIP 181
KFNAP PDE R++ +D P
Sbjct: 80 KFNAPFPDEFRATEREFVLDATP 102
>AF067608-9|AAC17652.1| 367|Caenorhabditis elegans Temporarily
assigned gene nameprotein 344 protein.
Length = 367
Score = 25.8 bits (54), Expect = 6.2
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +2
Query: 170 DLIPKFLMANGLLVKLLIHTGVTRXLEFKSIEGSYVY 280
D I KFL +VKLL H + R E S + ++
Sbjct: 110 DYIKKFLPREKEIVKLLKHDNICRLYEMISFQDHIIF 146
>Z92786-2|CAB07211.1| 518|Caenorhabditis elegans Hypothetical
protein F47H4.4 protein.
Length = 518
Score = 25.4 bits (53), Expect = 8.1
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 14 MLSVSGKKVLHIDRNKYYGGESASITPLEE 103
ML+ K+L++ Y GG S SIT +E
Sbjct: 470 MLNYDPMKILNVFEQNYSGGTSGSITYNDE 499
>Z74040-1|CAA98514.2| 340|Caenorhabditis elegans Hypothetical
protein K10D6.2a protein.
Length = 340
Score = 25.4 bits (53), Expect = 8.1
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = -3
Query: 166 VPVSTSTVCFIRCRCVELSEQLL*RGN*RRFTTVVLIAIDVQNLL 32
V +S VCF+ C C LS Q + R + T I+V L+
Sbjct: 238 VTLSVLCVCFVFCWCASLSFQKIRRSSSAATTVSSQQQINVDQLI 282
>L14324-3|AAA28185.1| 851|Caenorhabditis elegans Abnormal nucleoli
protein 1 protein.
Length = 851
Score = 25.4 bits (53), Expect = 8.1
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = +2
Query: 56 NKYYGGESASITPLEELFAKFNAPAPDETYGRGRDWNVDLIP 181
NK +GG S S+ P L A A D + W++ + P
Sbjct: 497 NKDFGGSSQSLGPFNPLGASVPGAAADPFSSQYDKWSLGVEP 538
>AF047027-1|AAC14263.1| 851|Caenorhabditis elegans B box zinc
finger protein Ncl-1 protein.
Length = 851
Score = 25.4 bits (53), Expect = 8.1
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = +2
Query: 56 NKYYGGESASITPLEELFAKFNAPAPDETYGRGRDWNVDLIP 181
NK +GG S S+ P L A A D + W++ + P
Sbjct: 497 NKDFGGSSQSLGPFNPLGASVPGAAADPFSSQYDKWSLGVEP 538
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,185,803
Number of Sequences: 27780
Number of extensions: 131002
Number of successful extensions: 400
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 376
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 397
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 333802358
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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