Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0027
         (309 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    30   0.007
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   2.6  
AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding prote...    21   4.5  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 29.9 bits (64), Expect = 0.007
 Identities = 15/42 (35%), Positives = 25/42 (59%)
 Frame = +2

Query: 170 DLIPKFLMANGLLVKLLIHTGVTRXLEFKSIEGSYVYKGGKI 295
           DL  + ++ N  LV  +   G++R +E  + EG+Y  +GGKI
Sbjct: 760 DLAARNVLVNAALVCKIADFGLSREIE-SATEGAYTTRGGKI 800


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 2.6
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +3

Query: 87  LPR*RSCSLSSTHRH 131
           + R R  SLSSTH H
Sbjct: 633 MERERDASLSSTHSH 647


>AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding protein
           ASP5 protein.
          Length = 143

 Score = 20.6 bits (41), Expect = 4.5
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +2

Query: 23  VSGKKVLHIDRNKYYGGESASIT 91
           V GK+++ + RN+ Y G+    T
Sbjct: 103 VIGKEIVAVCRNEEYTGDDCQKT 125


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,030
Number of Sequences: 438
Number of extensions: 1736
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6471036
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)