Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0026
         (692 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27B12.11c |||transcription factor |Schizosaccharomyces pombe...    29   0.64 
SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch...    26   4.5  
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual     25   7.9  
SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit Mts4|...    25   7.9  

>SPBC27B12.11c |||transcription factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 738

 Score = 29.1 bits (62), Expect = 0.64
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -2

Query: 529 DNRYQFPPEHLHQKRTRTIFGVHYVQLHHSIMS 431
           D  YQF   H+ Q  TR + G H   +H S  S
Sbjct: 34  DAEYQFINHHMQQLLTRPVEGTHSASVHPSTSS 66


>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 269

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
 Frame = +2

Query: 83  TNCGYFQADFDLISALGTWHVVAIIP---EKLFPDKDVTCYKM 202
           T CG+   +F ++SALGT       P    K+ P+K V C +M
Sbjct: 219 TPCGHIFCNFCILSALGTTAATQKCPVCRRKVHPNK-VICLEM 260


>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = -2

Query: 568 QLLFGNSLIPSINDNRYQFPPEHLHQKRTRTIFGVHYVQ 452
           Q  F NS+I  I    Y+   EH        + G+ Y+Q
Sbjct: 403 QASFYNSVIADIESGEYEIAIEHCFHFSQTVLSGLRYLQ 441


>SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit
           Mts4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -3

Query: 369 LIPAVDLDQTSKGCSVWYLCLTIVPF 292
           ++P V+LD  S+ C     C+ ++PF
Sbjct: 219 VVPFVELDNASRVCLYITSCVNLLPF 244


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,046,741
Number of Sequences: 5004
Number of extensions: 64614
Number of successful extensions: 137
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)