Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0026
(692 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0241 - 23551471-23551591,23551755-23551833,23553140-235533... 32 0.50
10_08_0448 + 18015609-18016052,18017147-18017248,18017332-180174... 29 3.5
03_06_0103 + 31661707-31662798,31662806-31662833,31663632-316637... 28 6.1
01_06_1286 + 36000741-36000796,36000885-36000939,36001036-360010... 28 6.1
08_02_0660 - 19768165-19769394,19770500-19770752,19771307-197713... 28 8.1
06_03_1329 - 29368815-29370064,29370186-29370318 28 8.1
05_05_0113 - 22485243-22485500,22485847-22486009,22486138-224862... 28 8.1
02_03_0397 + 18574277-18574618,18574740-18574848,18574854-18575872 28 8.1
>05_05_0241 -
23551471-23551591,23551755-23551833,23553140-23553334,
23553466-23553518,23553642-23553742,23553844-23553918,
23554033-23554272,23554369-23554490,23554582-23554706,
23554830-23554909,23555064-23555261
Length = 462
Score = 31.9 bits (69), Expect = 0.50
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = -2
Query: 343 NIKGMFRMVPLPHYRAFHICYYGLILRSMCGSIYQPSKTGLISFADFHFI 194
++ GMFR LP + F +C+ G ++ S + +PS L++ F +
Sbjct: 23 SVLGMFRYAVLPIAKVFVVCFMGFLMASKRVGVLKPSGRKLLNALVFSLL 72
>10_08_0448 +
18015609-18016052,18017147-18017248,18017332-18017475,
18017555-18017705,18017793-18017820,18018456-18018621,
18018701-18018764,18019320-18019423,18019572-18019710,
18020114-18020232,18020333-18020485,18020565-18020654,
18020952-18021029,18021671-18021829,18021914-18022117,
18022209-18022414,18022495-18022630,18022859-18022898,
18023329-18023408,18023569-18024228
Length = 1088
Score = 29.1 bits (62), Expect = 3.5
Identities = 20/92 (21%), Positives = 43/92 (46%)
Frame = +2
Query: 281 IADVKGTIVRQRYHTEHPFDVWSKSTAGIKGCFQQVLSLDLDKNRIHKTLAHDAMMQLHI 460
+ DV T++ H E D +++ A + GC + L+L L K H + ++ ++Q
Sbjct: 427 LGDVSFTVIDNENHVEIVVDEAAETVARLLGCSIEDLNLALSKR--HMKVNNENIVQKLT 484
Query: 461 VDSKDGSSPFLMQMLWGKLISVVVYRRNQGIT 556
+ + L + L+ L +V + N+ ++
Sbjct: 485 LSQAIDTRDALAKSLYASLFEWLVEQINKSLS 516
>03_06_0103 +
31661707-31662798,31662806-31662833,31663632-31663721,
31664725-31664789,31664864-31664980
Length = 463
Score = 28.3 bits (60), Expect = 6.1
Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Frame = +2
Query: 194 YKMEISETDEAGLRWL--INRTTHGPQNKSIIADVKGTIVRQRYHTEHPFDVWSKSTAGI 367
YK S ++ AG W+ ++ T P N+ + DV G + + + F +W
Sbjct: 263 YKSVGSGSNGAGEGWVETVSSTLAVPSNRKFVLDVTGRVTFETVRSFLEFALWKMHAGAK 322
Query: 368 KG 373
KG
Sbjct: 323 KG 324
>01_06_1286 +
36000741-36000796,36000885-36000939,36001036-36001086,
36001962-36002053,36002301-36002378,36002778-36002931
Length = 161
Score = 28.3 bits (60), Expect = 6.1
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +1
Query: 514 TDICCRLSKESGNYRRAVETNLRIGDQNP 600
T++ R +G Y R + T +R+GD P
Sbjct: 78 TELAYRYKNRAGGYTRLLRTRIRVGDAAP 106
>08_02_0660 -
19768165-19769394,19770500-19770752,19771307-19771372,
19771524-19771588,19773265-19773343,19773920-19774293
Length = 688
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = +1
Query: 454 AHSGLQRWF*SVSDANALGETDICCRLSKESGNYR 558
A G WF + D AL +CC L SG +R
Sbjct: 227 AAEGSGSWFLVMEDEAALERATVCCGLCHGSGTHR 261
>06_03_1329 - 29368815-29370064,29370186-29370318
Length = 460
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/41 (26%), Positives = 22/41 (53%)
Frame = +2
Query: 308 RQRYHTEHPFDVWSKSTAGIKGCFQQVLSLDLDKNRIHKTL 430
R ++ +HP+DV K IK + +++L+ ++ TL
Sbjct: 410 RDHFYIQHPYDVHKKGWDAIKTVYLDKQNVELNLTKLTNTL 450
>05_05_0113 -
22485243-22485500,22485847-22486009,22486138-22486229,
22486832-22486882,22487013-22487067,22487207-22487262
Length = 224
Score = 27.9 bits (59), Expect = 8.1
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +1
Query: 514 TDICCRLSKESGNYRRAVETNLRIGDQNP 600
T++ R +G Y R + T +R+GD P
Sbjct: 78 TELAYRYKDRAGGYTRLLRTRIRVGDAAP 106
>02_03_0397 + 18574277-18574618,18574740-18574848,18574854-18575872
Length = 489
Score = 27.9 bits (59), Expect = 8.1
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +2
Query: 320 HTEHPFDVWSKSTAGIKGCFQQVLSLDLDKNRIHKTLAHDAMMQLHIVDSKD 475
H P D+W + A I G F+QV + R+ + H ++ L +DS D
Sbjct: 50 HPALPEDLWDEHRAEISGFFEQVSHV-----RVAASFPHPNVVALFQIDSPD 96
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,843,511
Number of Sequences: 37544
Number of extensions: 387987
Number of successful extensions: 818
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 818
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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