Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0026
         (692 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81051-10|CAE17730.1|  206|Caenorhabditis elegans Hypothetical p...    30   1.8  
AC006618-3|AAK68251.3|  960|Caenorhabditis elegans Patched relat...    30   1.8  
Z81594-1|CAB04745.1|  908|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z79757-4|CAB02125.2|  436|Caenorhabditis elegans Hypothetical pr...    28   7.3  
U23527-5|AAC46572.2|  915|Caenorhabditis elegans Hypothetical pr...    27   9.6  
AF040661-16|AAG24218.1|  318|Caenorhabditis elegans Hypothetical...    27   9.6  

>Z81051-10|CAE17730.1|  206|Caenorhabditis elegans Hypothetical
           protein C55A6.11 protein.
          Length = 206

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = +2

Query: 287 DVKGTIVRQRYHTEHPFDVWSKSTAGIKGCFQQVLSLDLDKNRIHKTL 430
           +V   I+ +  H E    ++   T+G K CFQQ++  ++ +N  H  L
Sbjct: 29  NVSCPILSRTRHKELRTFMYKNCTSGFKTCFQQIMLTEIVRNEQHAFL 76


>AC006618-3|AAK68251.3|  960|Caenorhabditis elegans Patched related
           family protein 4 protein.
          Length = 960

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = -2

Query: 601 SDFGRQFEDWFQLLF 557
           SD+G+QFEDW Q +F
Sbjct: 4   SDYGKQFEDWMQKVF 18


>Z81594-1|CAB04745.1|  908|Caenorhabditis elegans Hypothetical
           protein T20F10.1 protein.
          Length = 908

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 26/89 (29%), Positives = 37/89 (41%), Gaps = 9/89 (10%)
 Frame = +2

Query: 32  LVFLTIYLTTSEGVTNSTNCGYFQADF------DLISALGTWHVVAIIPEKLFPDKDVTC 193
           L F+  Y+   + +T     G F+ D       +L  A+   H V  I   L PD  +  
Sbjct: 575 LYFIMEYVPGGDMMTLLIQKGIFEEDLARFYIAELACAIEYVHNVGFIHRDLKPDNILID 634

Query: 194 YKMEISETDEA---GLRWLINRTTHGPQN 271
               I  TD     GLRW  +R  +GP+N
Sbjct: 635 QHGHIKLTDFGLCTGLRWTHDRRYYGPEN 663


>Z79757-4|CAB02125.2|  436|Caenorhabditis elegans Hypothetical
           protein F55B12.4 protein.
          Length = 436

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 20/66 (30%), Positives = 35/66 (53%)
 Frame = +2

Query: 434 HDAMMQLHIVDSKDGSSPFLMQMLWGKLISVVVYRRNQGITEEQLKPIFELATKIRGPQR 613
           HD +    IV++KDG +    + +W +L  +VV R    + +E LK + E   +++    
Sbjct: 196 HDTIQA--IVENKDGMAGISAERIWTELKKIVVGR----MADEVLKAMIE-QCELQKYLG 248

Query: 614 LPKICD 631
           LPK C+
Sbjct: 249 LPKECN 254


>U23527-5|AAC46572.2|  915|Caenorhabditis elegans Hypothetical
           protein K09E2.1 protein.
          Length = 915

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +2

Query: 53  LTTSEGVTNSTNCGYFQADFDLISALGTWHVVAIIPEKLFPDKD 184
           LT++   T +T  G+  +    IS+L +W+ V  +P+    D D
Sbjct: 258 LTSAITPTLNTESGFLSSPSSPISSLSSWNAVLTLPDSEENDSD 301


>AF040661-16|AAG24218.1|  318|Caenorhabditis elegans Hypothetical
           protein W10G11.11 protein.
          Length = 318

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 23/82 (28%), Positives = 35/82 (42%)
 Frame = +2

Query: 164 KLFPDKDVTCYKMEISETDEAGLRWLINRTTHGPQNKSIIADVKGTIVRQRYHTEHPFDV 343
           KL  D+ +   K +I + D     W IN+T  G        +   TI+    H   P D 
Sbjct: 114 KLSMDELLNGKKYQIYKNDTEHYIWTINKTEDG-----WAMEYSKTILNNIIHCNDP-DA 167

Query: 344 WSKSTAGIKGCFQQVLSLDLDK 409
           +     G++GC++ VL    DK
Sbjct: 168 Y--KYPGVRGCYKIVLPFKEDK 187


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,567,072
Number of Sequences: 27780
Number of extensions: 352806
Number of successful extensions: 809
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 809
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)