Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0026
         (692 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    26   0.39 
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                24   1.6  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    23   3.6  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    22   4.8  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    22   4.8  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   4.8  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 25.8 bits (54), Expect = 0.39
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 363 PAVDLDQTSKGCSVWYLCLTIVP 295
           PA D+D+ +   S W L L IVP
Sbjct: 175 PAADVDEKTDANSWWALILVIVP 197


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -2

Query: 511 PPEHLHQKRTRTIFGVHYVQ 452
           PP H H  +T+++  +HY Q
Sbjct: 349 PPHHHHHHQTQSLQHLHYRQ 368


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -2

Query: 292 HICYYGLILRSMCGSI 245
           H C YG+ + S CG +
Sbjct: 44  HKCKYGIAMSSACGIV 59


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -2

Query: 247 IYQPSKTGLISFADFHFITSDI 182
           I  PSK GL    DF+   +DI
Sbjct: 1   IRPPSKQGLPVLVDFNIFVADI 22


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +2

Query: 575 IFELATKIRGPQRLPKI 625
           + ELA KI GP  LP I
Sbjct: 37  LLELAEKIPGPPALPLI 53


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +1

Query: 526 CRLSKESGNYRRAVETNLRIGDQNPRTPTIA 618
           C+   E GN  R+ +  LR+ D    T  +A
Sbjct: 31  CKWLSEGGNDTRSADCTLRVLDPGAITGLVA 61


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,674
Number of Sequences: 438
Number of extensions: 4071
Number of successful extensions: 19
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)