Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0022
         (685 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2E1P3.01 |||zinc binding dehydrogenase|Schizosaccharomyces p...    27   1.9  
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr...    26   5.8  
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce...    25   7.7  
SPAC16A10.03c |||zinc finger protein Pep5/Vps11 |Schizosaccharom...    25   7.7  

>SPAC2E1P3.01 |||zinc binding dehydrogenase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 348

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -1

Query: 661 SSLKTGRLVSKSSELPGPASEIYIIG 584
           S +K G+L++  S  P P SE+ IIG
Sbjct: 242 SKVKDGKLINILSSPPSPRSEVKIIG 267


>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 703

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 13/45 (28%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
 Frame = +1

Query: 274 LNAIKRVSSKDVFPWALC*VWAHLQ--LFKRDI*NQTQDLVHSQR 402
           L+   R+S   + PW+LC ++  +Q  LF +D+  +  D V+ ++
Sbjct: 6   LSLAARLSQCWISPWSLCCLYILMQFFLFTKDLNTKIGDFVNDEQ 50


>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1242

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = -3

Query: 194 CWTLLIPVGIRIIHSLNF 141
           CWT+L+P+  + + +LNF
Sbjct: 101 CWTVLLPLIFKHVWNLNF 118


>SPAC16A10.03c |||zinc finger protein Pep5/Vps11
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = +1

Query: 10  NGLSSKLIRRLLAESPYLLCYVLKQKSINNQTF*NLSIL*FSH*KFKL*IIRMPT 174
           N  S + I+ L  E  Y+L   L ++S +N  F +   + FS  K    +IR+P+
Sbjct: 292 NNSSIREIKALDVEKRYVLYESLLEQSYDNIFFNSFDCIFFSSTKVPCQLIRLPS 346


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,827,776
Number of Sequences: 5004
Number of extensions: 58984
Number of successful extensions: 155
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)