Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0022
         (685 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0462 + 5976706-5976816,5976845-5976988                           29   4.5  
04_04_1457 - 33741048-33741146,33741647-33741760,33741938-337420...    28   7.9  

>04_01_0462 + 5976706-5976816,5976845-5976988
          Length = 84

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = -2

Query: 288 LDCIQLTLSAHLEKTYTAKQERMGLVHRVQEVLDSVD 178
           LD + +  SAHLE T TAK E +  ++   ++L+ +D
Sbjct: 41  LDLLAMITSAHLEPTLTAK-EFLRAINEQSKMLEEID 76


>04_04_1457 -
           33741048-33741146,33741647-33741760,33741938-33742052,
           33742154-33742560,33743342-33743476,33743576-33743970,
           33744225-33744916,33745014-33745097,33745195-33745286,
           33745374-33745457,33745535-33745714,33746258-33746302,
           33746399-33746692,33747199-33747585,33747713-33747899,
           33748042-33748118,33748936-33749067,33749315-33749416,
           33749744-33749827,33749902-33749992,33750105-33750178,
           33750644-33750664,33751433-33751477,33752427-33752561,
           33752693-33752752
          Length = 1376

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +3

Query: 366 LKPNPRFGPFPKVTLAVVVGYFLGKLSY 449
           +KPN +FGPFP+  +AV +   L  L Y
Sbjct: 123 IKPN-KFGPFPESLVAVYIAQVLEGLVY 149


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,020,090
Number of Sequences: 37544
Number of extensions: 389402
Number of successful extensions: 1045
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1021
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1045
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)