Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0022
         (685 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50701| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.12 
SB_18177| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_47829| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  

>SB_50701| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 311

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
 Frame = +3

Query: 390 PFPKVTLAVVVGYFLGKLSYQQACAEKLMALPGSYIG-QILRDREEWKDWRDFNAST 557
           P P   LA++ GY        +   E  M LP    G  +L +   WKDW DF  S+
Sbjct: 58  PTPVFFLALLTGYLCSSNRGCERTGEDSMLLPSVVNGLPVLVEPWRWKDWEDFTQSS 114


>SB_18177| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1050

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +2

Query: 509 KRSGRMERLEGLQCQYRPLSMYGATTNDI 595
           + S R +   G+QC   PLSMY   TNDI
Sbjct: 146 RNSLRFQADTGVQCNVVPLSMYKKATNDI 174


>SB_47829| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 70

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +3

Query: 378 PRFGPFPKVTLAVVVGYFLGKL 443
           PR  PFPK  LA+ +G F GK+
Sbjct: 49  PRLVPFPKRWLALTLGQFGGKI 70


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,739,992
Number of Sequences: 59808
Number of extensions: 426000
Number of successful extensions: 1024
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 936
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1023
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)