Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0022
(685 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z69904-9|CAH60797.1| 2101|Caenorhabditis elegans Hypothetical pr... 29 2.3
Z69904-8|CAD57719.1| 2392|Caenorhabditis elegans Hypothetical pr... 29 2.3
Z69904-7|CAB54502.2| 2407|Caenorhabditis elegans Hypothetical pr... 29 2.3
Z69904-6|CAB54501.3| 2211|Caenorhabditis elegans Hypothetical pr... 29 2.3
Z66511-12|CAH60796.1| 2101|Caenorhabditis elegans Hypothetical p... 29 2.3
Z66511-11|CAD57694.1| 2392|Caenorhabditis elegans Hypothetical p... 29 2.3
Z66511-10|CAB54211.2| 2407|Caenorhabditis elegans Hypothetical p... 29 2.3
Z66511-9|CAB54210.3| 2211|Caenorhabditis elegans Hypothetical pr... 29 2.3
Z69902-6|CAD89723.1| 684|Caenorhabditis elegans Hypothetical pr... 29 4.1
Z69902-5|CAA93762.1| 725|Caenorhabditis elegans Hypothetical pr... 29 4.1
U20861-6|AAA62294.1| 256|Caenorhabditis elegans Temporarily ass... 28 5.4
U20861-5|AAT92079.1| 256|Caenorhabditis elegans Temporarily ass... 28 5.4
Z81455-3|CAB03808.2| 890|Caenorhabditis elegans Hypothetical pr... 28 7.1
AL032623-19|CAA21519.2| 890|Caenorhabditis elegans Hypothetical... 28 7.1
U32305-11|AAL50323.1| 663|Caenorhabditis elegans Splicing facto... 27 9.4
U32305-10|AAM75378.1| 749|Caenorhabditis elegans Splicing facto... 27 9.4
U32305-9|AAM75380.1| 751|Caenorhabditis elegans Splicing factor... 27 9.4
U06933-1|AAA64938.1| 551|Caenorhabditis elegans CeSWAP protein. 27 9.4
U06932-1|AAA64937.1| 749|Caenorhabditis elegans CeSWAP protein. 27 9.4
AY305847-1|AAR11991.1| 461|Caenorhabditis elegans nuclear recep... 27 9.4
AF099915-4|AAC68773.2| 461|Caenorhabditis elegans Nuclear hormo... 27 9.4
>Z69904-9|CAH60797.1| 2101|Caenorhabditis elegans Hypothetical
protein F07A11.6e protein.
Length = 2101
Score = 29.5 bits (63), Expect = 2.3
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = -2
Query: 480 MPSASQHMPAGMTTSPRSSQPLLPMSPL 397
+P SQ +G T+PRSSQP MSP+
Sbjct: 503 LPGTSQPSTSGGITTPRSSQPPPLMSPV 530
>Z69904-8|CAD57719.1| 2392|Caenorhabditis elegans Hypothetical
protein F07A11.6c protein.
Length = 2392
Score = 29.5 bits (63), Expect = 2.3
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = -2
Query: 480 MPSASQHMPAGMTTSPRSSQPLLPMSPL 397
+P SQ +G T+PRSSQP MSP+
Sbjct: 794 LPGTSQPSTSGGITTPRSSQPPPLMSPV 821
>Z69904-7|CAB54502.2| 2407|Caenorhabditis elegans Hypothetical
protein F07A11.6b protein.
Length = 2407
Score = 29.5 bits (63), Expect = 2.3
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = -2
Query: 480 MPSASQHMPAGMTTSPRSSQPLLPMSPL 397
+P SQ +G T+PRSSQP MSP+
Sbjct: 809 LPGTSQPSTSGGITTPRSSQPPPLMSPV 836
>Z69904-6|CAB54501.3| 2211|Caenorhabditis elegans Hypothetical
protein F07A11.6a protein.
Length = 2211
Score = 29.5 bits (63), Expect = 2.3
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = -2
Query: 480 MPSASQHMPAGMTTSPRSSQPLLPMSPL 397
+P SQ +G T+PRSSQP MSP+
Sbjct: 809 LPGTSQPSTSGGITTPRSSQPPPLMSPV 836
>Z66511-12|CAH60796.1| 2101|Caenorhabditis elegans Hypothetical
protein F07A11.6e protein.
Length = 2101
Score = 29.5 bits (63), Expect = 2.3
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = -2
Query: 480 MPSASQHMPAGMTTSPRSSQPLLPMSPL 397
+P SQ +G T+PRSSQP MSP+
Sbjct: 503 LPGTSQPSTSGGITTPRSSQPPPLMSPV 530
>Z66511-11|CAD57694.1| 2392|Caenorhabditis elegans Hypothetical
protein F07A11.6c protein.
Length = 2392
Score = 29.5 bits (63), Expect = 2.3
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = -2
Query: 480 MPSASQHMPAGMTTSPRSSQPLLPMSPL 397
+P SQ +G T+PRSSQP MSP+
Sbjct: 794 LPGTSQPSTSGGITTPRSSQPPPLMSPV 821
>Z66511-10|CAB54211.2| 2407|Caenorhabditis elegans Hypothetical
protein F07A11.6b protein.
Length = 2407
Score = 29.5 bits (63), Expect = 2.3
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = -2
Query: 480 MPSASQHMPAGMTTSPRSSQPLLPMSPL 397
+P SQ +G T+PRSSQP MSP+
Sbjct: 809 LPGTSQPSTSGGITTPRSSQPPPLMSPV 836
>Z66511-9|CAB54210.3| 2211|Caenorhabditis elegans Hypothetical
protein F07A11.6a protein.
Length = 2211
Score = 29.5 bits (63), Expect = 2.3
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = -2
Query: 480 MPSASQHMPAGMTTSPRSSQPLLPMSPL 397
+P SQ +G T+PRSSQP MSP+
Sbjct: 809 LPGTSQPSTSGGITTPRSSQPPPLMSPV 836
>Z69902-6|CAD89723.1| 684|Caenorhabditis elegans Hypothetical
protein C47D12.6b protein.
Length = 684
Score = 28.7 bits (61), Expect = 4.1
Identities = 11/23 (47%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Frame = +2
Query: 278 MQSREF-LPKMSSPGHCVRFGHI 343
++ EF L M+ PGHC+ FGH+
Sbjct: 359 VEKEEFGLKPMNCPGHCLMFGHM 381
>Z69902-5|CAA93762.1| 725|Caenorhabditis elegans Hypothetical
protein C47D12.6a protein.
Length = 725
Score = 28.7 bits (61), Expect = 4.1
Identities = 11/23 (47%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Frame = +2
Query: 278 MQSREF-LPKMSSPGHCVRFGHI 343
++ EF L M+ PGHC+ FGH+
Sbjct: 400 VEKEEFGLKPMNCPGHCLMFGHM 422
>U20861-6|AAA62294.1| 256|Caenorhabditis elegans Temporarily
assigned gene nameprotein 327, isoform a protein.
Length = 256
Score = 28.3 bits (60), Expect = 5.4
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +2
Query: 359 GTSETKPKIWSIPKGDIGSSGWLLLGEVVIPAG 457
G +K + +IPKGD + G ++G+VVI G
Sbjct: 3 GELSSKHGVNTIPKGDCAACGKPIIGQVVIALG 35
>U20861-5|AAT92079.1| 256|Caenorhabditis elegans Temporarily
assigned gene nameprotein 327, isoform b protein.
Length = 256
Score = 28.3 bits (60), Expect = 5.4
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +2
Query: 359 GTSETKPKIWSIPKGDIGSSGWLLLGEVVIPAG 457
G +K + +IPKGD + G ++G+VVI G
Sbjct: 73 GELSSKHGVNTIPKGDCAACGKPIIGQVVIALG 105
>Z81455-3|CAB03808.2| 890|Caenorhabditis elegans Hypothetical
protein B0399.2 protein.
Length = 890
Score = 27.9 bits (59), Expect = 7.1
Identities = 16/57 (28%), Positives = 27/57 (47%)
Frame = +2
Query: 311 SPGHCVRFGHICSYSKGTSETKPKIWSIPKGDIGSSGWLLLGEVVIPAGMC*EADGI 481
S G F C+ ++ ++KP+ W IP+ D+ +L + PA EAD +
Sbjct: 203 SAGFVALFLKKCAPTEPVKDSKPETWKIPQNDVAYCLVAVLFLCIFPA----EADAV 255
>AL032623-19|CAA21519.2| 890|Caenorhabditis elegans Hypothetical
protein B0399.2 protein.
Length = 890
Score = 27.9 bits (59), Expect = 7.1
Identities = 16/57 (28%), Positives = 27/57 (47%)
Frame = +2
Query: 311 SPGHCVRFGHICSYSKGTSETKPKIWSIPKGDIGSSGWLLLGEVVIPAGMC*EADGI 481
S G F C+ ++ ++KP+ W IP+ D+ +L + PA EAD +
Sbjct: 203 SAGFVALFLKKCAPTEPVKDSKPETWKIPQNDVAYCLVAVLFLCIFPA----EADAV 255
>U32305-11|AAL50323.1| 663|Caenorhabditis elegans Splicing factor
(suppressor ofwhite apricot) related protein 1, isoform
b protein.
Length = 663
Score = 27.5 bits (58), Expect = 9.4
Identities = 10/42 (23%), Positives = 19/42 (45%)
Frame = +3
Query: 522 EWKDWRDFNASTDPFQCTEPLPMIYISDAGPGSSLDLDTNRP 647
+W+ ++ + P P P +S GP S + L+ + P
Sbjct: 355 QWRMYQPIEQNLSPLVLNSPAPPSAVSSPGPSSLMSLNLSTP 396
>U32305-10|AAM75378.1| 749|Caenorhabditis elegans Splicing factor
(suppressor ofwhite apricot) related protein 1, isoform
a protein.
Length = 749
Score = 27.5 bits (58), Expect = 9.4
Identities = 10/42 (23%), Positives = 19/42 (45%)
Frame = +3
Query: 522 EWKDWRDFNASTDPFQCTEPLPMIYISDAGPGSSLDLDTNRP 647
+W+ ++ + P P P +S GP S + L+ + P
Sbjct: 439 QWRMYQPIEQNLSPLVLNSPAPPSAVSSPGPSSLMSLNLSTP 480
>U32305-9|AAM75380.1| 751|Caenorhabditis elegans Splicing factor
(suppressor ofwhite apricot) related protein 1, isoform
d protein.
Length = 751
Score = 27.5 bits (58), Expect = 9.4
Identities = 10/42 (23%), Positives = 19/42 (45%)
Frame = +3
Query: 522 EWKDWRDFNASTDPFQCTEPLPMIYISDAGPGSSLDLDTNRP 647
+W+ ++ + P P P +S GP S + L+ + P
Sbjct: 443 QWRMYQPIEQNLSPLVLNSPAPPSAVSSPGPSSLMSLNLSTP 484
>U06933-1|AAA64938.1| 551|Caenorhabditis elegans CeSWAP protein.
Length = 551
Score = 27.5 bits (58), Expect = 9.4
Identities = 10/42 (23%), Positives = 19/42 (45%)
Frame = +3
Query: 522 EWKDWRDFNASTDPFQCTEPLPMIYISDAGPGSSLDLDTNRP 647
+W+ ++ + P P P +S GP S + L+ + P
Sbjct: 439 QWRMYQPIEQNLSPLVLNSPAPPSAVSSPGPSSLMSLNLSTP 480
>U06932-1|AAA64937.1| 749|Caenorhabditis elegans CeSWAP protein.
Length = 749
Score = 27.5 bits (58), Expect = 9.4
Identities = 10/42 (23%), Positives = 19/42 (45%)
Frame = +3
Query: 522 EWKDWRDFNASTDPFQCTEPLPMIYISDAGPGSSLDLDTNRP 647
+W+ ++ + P P P +S GP S + L+ + P
Sbjct: 439 QWRMYQPIEQNLSPLVLNSPAPPSAVSSPGPSSLMSLNLSTP 480
>AY305847-1|AAR11991.1| 461|Caenorhabditis elegans nuclear receptor
NHR-121 protein.
Length = 461
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +3
Query: 441 LSYQQACAEKLMALPGSYIGQILRDREEWKDWRD 542
LSY+ EK + G Y+G D+ W+D +D
Sbjct: 289 LSYRLGLPEKFVMFNGMYVGVQDGDKTGWEDEKD 322
>AF099915-4|AAC68773.2| 461|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 121 protein.
Length = 461
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +3
Query: 441 LSYQQACAEKLMALPGSYIGQILRDREEWKDWRD 542
LSY+ EK + G Y+G D+ W+D +D
Sbjct: 289 LSYRLGLPEKFVMFNGMYVGVQDGDKTGWEDEKD 322
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,404,658
Number of Sequences: 27780
Number of extensions: 330625
Number of successful extensions: 879
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 843
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 879
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -