Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0020
         (596 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15E1.10 ||SPAP7G5.01|PI31 proteasome regulator related|Schiz...    31   0.17 
SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|c...    27   1.6  
SPBC15D4.01c ||SPBC2D10.21c|kinesin-like protein|Schizosaccharom...    25   6.3  
SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   8.4  
SPBC4.03c |||COPII-coated vesicle component Sfb3 |Schizosaccharo...    25   8.4  

>SPAC15E1.10 ||SPAP7G5.01|PI31 proteasome regulator
           related|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 265

 Score = 30.7 bits (66), Expect = 0.17
 Identities = 26/77 (33%), Positives = 32/77 (41%), Gaps = 6/77 (7%)
 Frame = -3

Query: 429 GVNPDSQDLWAVPPGRNVGHSDLDPFSPFG------GGMIFNPFAPRRDIENPGLGVPGG 268
           G  P SQ ++      ++G SDL P    G      GGMI     P    EN        
Sbjct: 151 GAMPGSQPMFP-----SIGASDLYPAGIGGSDMGNDGGMIPTFNHPIFHPENRSRNEQAS 205

Query: 267 LPRAAVPPGARFDPFAP 217
             R  +PPGAR+DP  P
Sbjct: 206 ANRTNIPPGARYDPTGP 222


>SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 474

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = +2

Query: 230 SKRAPGGTAALGNPPGTPRPGFSMSRRGANGLNIIPPPKGENGSRSEWPTLRP 388
           S+R+P  ++   N   T   GF   R+GA+  ++IPP +  +      P L P
Sbjct: 12  SRRSPSSSSIGTNE--TDHTGFHEKRQGASSESLIPPAQRSSEESMPAPKLFP 62


>SPBC15D4.01c ||SPBC2D10.21c|kinesin-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 633

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +2

Query: 266 NPPGTPRPGFSMSRRGANGLNIIPPPKGEN-GSRS 367
           +P G+      + R  AN   I+PPP  EN GS+S
Sbjct: 371 DPFGSFDENAQVMRYSANAREILPPPLNENSGSQS 405


>SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 485

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -3

Query: 414 SQDLWAVPPGRNVGHSDLDPFSPFGGGMIFNPFAP 310
           + DL    PGR V  SDL P + F    + + F P
Sbjct: 179 TSDLPPSDPGRFVDDSDLTPHTDFTNRFVDSDFDP 213


>SPBC4.03c |||COPII-coated vesicle component Sfb3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = -3

Query: 369 SDLD-PFSPFGGGMIFNPFAPRRDIE 295
           SDL+ PF PF  G+  +P A +  IE
Sbjct: 360 SDLENPFVPFSSGLFVDPIASKVVIE 385


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,390,868
Number of Sequences: 5004
Number of extensions: 49698
Number of successful extensions: 141
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)