Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0020
(596 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0817 - 21735283-21735358,21735719-21735796,21735885-217359... 41 9e-04
05_07_0249 - 28659760-28659831,28660376-28660412,28660691-28660974 32 0.30
07_03_0471 + 18501496-18502104,18503009-18503260,18503367-185035... 32 0.40
01_06_1507 - 37838645-37839311,37839393-37839499,37839588-378396... 32 0.40
04_04_1404 + 33302080-33303341,33303435-33305307 31 0.92
11_02_0062 - 7909343-7909413,7909509-7910974,7911064-7912088,791... 30 1.6
03_02_0625 + 9942767-9943196,9943985-9944176,9944267-9944506,994... 30 1.6
01_03_0005 + 11568545-11569119,11569179-11569191 30 1.6
01_01_0715 - 5542648-5543219,5543352-5543544 30 1.6
08_02_0123 - 12822383-12822814 29 2.8
09_06_0374 + 22649455-22650024,22650085-22650637,22650812-226511... 29 3.7
03_02_0553 - 9420960-9421164,9421634-9421812,9421902-9421970,942... 29 3.7
08_01_0532 - 4611650-4612706,4613405-4613757 28 4.9
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 28 4.9
01_05_0291 - 20515206-20516262,20516961-20517313 28 4.9
12_02_0800 + 23299674-23299678,23299714-23299791,23299876-232999... 28 6.5
02_05_0637 + 30543158-30543895 28 6.5
02_03_0225 - 16585143-16585315,16585403-16585527,16585611-165857... 28 6.5
01_06_0954 - 33322951-33323606,33324213-33325014 28 6.5
01_01_0463 - 3424951-3425065,3425191-3425258,3425362-3425586,342... 28 6.5
11_06_0611 + 25461469-25461655,25461670-25462238 27 8.6
06_03_0794 - 24671955-24672362,24672469-24672505,24672804-246728... 27 8.6
06_03_0543 + 21967787-21970261 27 8.6
06_03_0082 + 16363742-16364632 27 8.6
04_04_1104 - 30928475-30928501,30929008-30929110,30929287-309293... 27 8.6
02_05_0146 - 26267245-26267339,26267427-26267469,26267589-262677... 27 8.6
02_01_0244 + 1603381-1603792,1604054-1604132,1604993-1605862,160... 27 8.6
>07_03_0817 -
21735283-21735358,21735719-21735796,21735885-21735945,
21736038-21736069,21736144-21736221,21738046-21738213,
21738711-21738897,21740019-21740160
Length = 273
Score = 40.7 bits (91), Expect = 9e-04
Identities = 32/79 (40%), Positives = 35/79 (44%), Gaps = 10/79 (12%)
Frame = -3
Query: 393 PPGRNVGHSDLDP-----FSPF-----GGGMIFNPFAPRRDIENPGLGVPGGLPRAAVPP 244
PP +GH D P F P GG M P PR NP VP G P +VPP
Sbjct: 170 PPIAPLGHDDAFPGPGAGFYPHSGIGGGGSMHVGPNDPRFFPSNP-FPVPFGGP-GSVPP 227
Query: 243 GARFDPFAPPGVGEPIPGR 187
G R+DP PP V P R
Sbjct: 228 GGRYDPIGPPDVPGFEPSR 246
>05_07_0249 - 28659760-28659831,28660376-28660412,28660691-28660974
Length = 130
Score = 32.3 bits (70), Expect = 0.30
Identities = 23/64 (35%), Positives = 24/64 (37%)
Frame = +2
Query: 221 ANGSKRAPGGTAALGNPPGTPRPGFSMSRRGANGLNIIPPPKGENGSRSEWPTLRPGGTA 400
A S R A G P TP G R + G P G WP L PGG A
Sbjct: 7 AKRSCRTDARARAAGRPDLTPGGGGGSGARRSYGCGAGPRAAG-------WPDLTPGGGA 59
Query: 401 HRSC 412
RSC
Sbjct: 60 KRSC 63
>07_03_0471 + 18501496-18502104,18503009-18503260,18503367-18503537,
18503693-18503743,18503868-18503960,18504125-18504220,
18504318-18504368,18504452-18504570,18504909-18505017,
18505391-18505513,18505590-18505661,18505963-18506034,
18506125-18506191,18506260-18506402,18506494-18506565,
18506632-18506760,18507317-18507472,18507579-18507692,
18507791-18507889,18507974-18508051,18508402-18508536,
18509081-18509155,18509247-18509361,18509458-18509828,
18509903-18509965,18510049-18510120,18510285-18510413,
18510512-18510628,18510902-18511018
Length = 1289
Score = 31.9 bits (69), Expect = 0.40
Identities = 22/55 (40%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Frame = -3
Query: 360 DPFSPFGGGMIFNPFAPRRDIENPGLGVPG-GLPRAAVPP--GARFDPFAPPGVG 205
D S G G F PF P PG+ G LPR PP GA P+A P G
Sbjct: 993 DKRSGRGKGHSFVPFGPPNGAHKPGVHPSGYPLPRMPFPPFAGAHSQPYAIPTRG 1047
>01_06_1507 - 37838645-37839311,37839393-37839499,37839588-37839663,
37839747-37839869,37840051-37840208,37840311-37840385,
37840466-37840506,37840594-37840670,37840755-37840883,
37840990-37841060,37841237-37841332,37841489-37841584,
37841681-37841953,37842871-37842957,37843101-37843178,
37843350-37843514,37843622-37843768,37843921-37843983,
37844082-37844201,37844352-37844543,37844672-37844748,
37845094-37845196,37845684-37845887
Length = 1074
Score = 31.9 bits (69), Expect = 0.40
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = -3
Query: 357 PFSPFGGGMIF-NPFAPRRDIENPGLGVPGGLPRAAVPP 244
P+ GM + N PR + PG VPG LP VPP
Sbjct: 891 PYQTIMNGMPYPNGIPPRMEQPAPGWHVPGDLPNGQVPP 929
>04_04_1404 + 33302080-33303341,33303435-33305307
Length = 1044
Score = 30.7 bits (66), Expect = 0.92
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Frame = +2
Query: 227 GSKRAPGGTAALG---NPPGTPRPGFSMSRRGANGLNIIPPPKGENGSRSEWPTLRPGGT 397
G + APGG A G G+ RP + +R G PP+G +R+ + RP G
Sbjct: 322 GEQSAPGGGRASGPRVGGSGSSRPADAQGKRKLGGTPPPSPPRGGGAARAS--SRRPEGA 379
Query: 398 AHRS 409
A S
Sbjct: 380 APTS 383
>11_02_0062 -
7909343-7909413,7909509-7910974,7911064-7912088,
7912300-7912809,7913418-7913441,7913617-7913673
Length = 1050
Score = 29.9 bits (64), Expect = 1.6
Identities = 21/53 (39%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
Frame = +2
Query: 230 SKRAPGGTAALGNPPGT-----PRPGF-SMSRRGANGLNIIPPPKGENGSRSE 370
S AP A+GN P T PR GF MSR + G I P G GS ++
Sbjct: 161 STSAPSLGPAVGNEPTTPKGQGPRRGFVLMSRAASTGTQIPPQTAGTGGSNTQ 213
>03_02_0625 +
9942767-9943196,9943985-9944176,9944267-9944506,
9945397-9945614,9946284-9946535,9947132-9947410
Length = 536
Score = 29.9 bits (64), Expect = 1.6
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 2/82 (2%)
Frame = -3
Query: 426 VNPDSQDLWAVPPGRNVGHSDLDPFSPFGGGMIFNPFAPRRDIENPGLGVPGGLPRAAVP 247
+ P S +P GR++ + + + F+ AP + + G+PG P
Sbjct: 163 IGPPSAKTIQLPDGRHLAYKEQGVTADRAR---FSLIAPHSFLSSRLAGIPGIKPSLLEE 219
Query: 246 PGARFDPFAPPGVGE--PIPGR 187
GAR + PG GE P PGR
Sbjct: 220 FGARLVTYDLPGFGESDPHPGR 241
>01_03_0005 + 11568545-11569119,11569179-11569191
Length = 195
Score = 29.9 bits (64), Expect = 1.6
Identities = 18/61 (29%), Positives = 22/61 (36%)
Frame = +2
Query: 221 ANGSKRAPGGTAALGNPPGTPRPGFSMSRRGANGLNIIPPPKGENGSRSEWPTLRPGGTA 400
+ G GGT +PP G S G G+ PP G G W GG A
Sbjct: 77 SGGGGGGGGGTVMYTSPPPPYSGGGGGSSTGGGGIYYPPPTGGGGGGGGGWQQGGGGGGA 136
Query: 401 H 403
+
Sbjct: 137 Y 137
>01_01_0715 - 5542648-5543219,5543352-5543544
Length = 254
Score = 29.9 bits (64), Expect = 1.6
Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 7/58 (12%)
Frame = +2
Query: 224 NGSKRAPG----GTAALGNPPGTPRP---GFSMSRRGANGLNIIPPPKGENGSRSEWP 376
NG+ RAP A G+PP P P G + A G+N P G NG+ + P
Sbjct: 169 NGTARAPSPPVPAPAPAGSPPPPPPPPAGGNFTAPSPAGGMNFTAPAPGTNGTAAPPP 226
>08_02_0123 - 12822383-12822814
Length = 143
Score = 29.1 bits (62), Expect = 2.8
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = +1
Query: 175 RRWPSSRDGFTNTGGRKRIETCP-RGNRSSWQSTWNTQAW 291
RRWP +R G R+ E RG +SSWQ+ +W
Sbjct: 68 RRWPVARRTEDAHGLRRSEEAAGIRGQKSSWQARRQRDSW 107
>09_06_0374 +
22649455-22650024,22650085-22650637,22650812-22651147,
22651171-22652605,22652939-22653062
Length = 1005
Score = 28.7 bits (61), Expect = 3.7
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
Frame = +2
Query: 227 GSKRAPGGTAALGNP---PGTPRPGFSMSRRGANGLNIIPPPKGENGSRSEWPTLRPGGT 397
G + P G A G+ PG+ RP + +R G PP+G +R+ RP G
Sbjct: 302 GEQSTPRGGRASGSRDRGPGSSRPADARGKRKQGGTPPPSPPRGGGAARAS--NRRPEGA 359
Query: 398 AHRS 409
A S
Sbjct: 360 APTS 363
>03_02_0553 -
9420960-9421164,9421634-9421812,9421902-9421970,
9422452-9422607,9422756-9422968
Length = 273
Score = 28.7 bits (61), Expect = 3.7
Identities = 20/49 (40%), Positives = 23/49 (46%)
Frame = +2
Query: 224 NGSKRAPGGTAALGNPPGTPRPGFSMSRRGANGLNIIPPPKGENGSRSE 370
N +K AP G A G P G PRP RRG G + P G G R +
Sbjct: 202 NVAKSAPRGGPA-GLPQGRPRPRGGGRRRGGGGGS--GGPGGSGGRRGK 247
>08_01_0532 - 4611650-4612706,4613405-4613757
Length = 469
Score = 28.3 bits (60), Expect = 4.9
Identities = 28/84 (33%), Positives = 36/84 (42%), Gaps = 5/84 (5%)
Frame = -3
Query: 429 GVNPDSQDLWAVPPGRNVG-----HSDLDPFSPFGGGMIFNPFAPRRDIENPGLGVPGGL 265
G P++ D A P R +G + PFS G G+ P PR LG GG
Sbjct: 12 GGTPEASDAAAAAPARTLGCGVGSATAALPFSRGGRGVGLAP-PPR------SLGRGGGP 64
Query: 264 PRAAVPPGARFDPFAPPGVGEPIP 193
AA+PPG F ++ G P P
Sbjct: 65 AVAAIPPGG-FPSYSASMDGFPFP 87
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 28.3 bits (60), Expect = 4.9
Identities = 18/49 (36%), Positives = 21/49 (42%)
Frame = -3
Query: 339 GGMIFNPFAPRRDIENPGLGVPGGLPRAAVPPGARFDPFAPPGVGEPIP 193
GG+ P PR G P G P +PPG P PPG G +P
Sbjct: 1180 GGVAPPPPPPRGHGGVGGPPTPPGAPAPPMPPGVPGGPPPPPG-GRGLP 1227
>01_05_0291 - 20515206-20516262,20516961-20517313
Length = 469
Score = 28.3 bits (60), Expect = 4.9
Identities = 28/84 (33%), Positives = 36/84 (42%), Gaps = 5/84 (5%)
Frame = -3
Query: 429 GVNPDSQDLWAVPPGRNVG-----HSDLDPFSPFGGGMIFNPFAPRRDIENPGLGVPGGL 265
G P++ D A P R +G + PFS G G+ P PR LG GG
Sbjct: 12 GGTPEASDAAAAAPARTLGCGVGSATAALPFSRGGRGVGLAP-PPR------SLGRGGGP 64
Query: 264 PRAAVPPGARFDPFAPPGVGEPIP 193
AA+PPG F ++ G P P
Sbjct: 65 AVAAIPPGG-FPSYSASMDGFPFP 87
>12_02_0800 +
23299674-23299678,23299714-23299791,23299876-23299920,
23300052-23300415,23300493-23300574,23300793-23300873,
23300974-23302106,23302202-23302350,23302426-23302516,
23303628-23305940
Length = 1446
Score = 27.9 bits (59), Expect = 6.5
Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
Frame = -3
Query: 390 PGRNVGHSDLDPFSPFGGGMIFNPFAPRRDIENPGLG-VPGGLPRAAVPPGARFDPFAPP 214
PG ++ + P P+ G P P D + G P G+ PG + P PP
Sbjct: 249 PGTSLPNKAQQP-QPYPGNFCVAP--PHFDSWHAPPGHPPDGMWHRGAAPGGPYRPLGPP 305
Query: 213 GVGEPI 196
G G P+
Sbjct: 306 GGGFPV 311
>02_05_0637 + 30543158-30543895
Length = 245
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Frame = +2
Query: 269 PPGTPR-PGFSMSRRGANGLNIIPPPKGENGSRSEWPTL 382
PPG R P F+ + G + PP G + WPTL
Sbjct: 189 PPGILRSPRFAATPEWGAGFMVPPPAPGAAKTPQRWPTL 227
>02_03_0225 -
16585143-16585315,16585403-16585527,16585611-16585701,
16585791-16586064,16586304-16586561
Length = 306
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = +1
Query: 73 LCNSIYYIIAYSPEH--RLHEHILIKASWRWKVISVR 177
LCN+I I SP R HE + W+W ++ VR
Sbjct: 25 LCNAIILCILSSPCRIVRFHEIQMDHIHWKWWIVRVR 61
>01_06_0954 - 33322951-33323606,33324213-33325014
Length = 485
Score = 27.9 bits (59), Expect = 6.5
Identities = 19/52 (36%), Positives = 22/52 (42%), Gaps = 4/52 (7%)
Frame = +2
Query: 272 PGTPRPGFSMSRR---GANGLNIIPPPKGENGSRSEWPTLRPGGTAHR-SCE 415
PGTP PG+S + G PP+ N G TAHR SCE
Sbjct: 180 PGTPGPGWSHGLQYSGSCRGSMRCTPPRSPNVLLDSRDAAAAGVTAHRASCE 231
>01_01_0463 -
3424951-3425065,3425191-3425258,3425362-3425586,
3425669-3425804,3425905-3426107,3426227-3426340,
3426432-3426506,3426625-3426783,3426868-3427038,
3427227-3427274,3427366-3427491,3427611-3427718,
3427800-3427913,3428320-3428496
Length = 612
Score = 27.9 bits (59), Expect = 6.5
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Frame = +1
Query: 148 SWRWKVISVRRWPSSRDGFTNTGGRKRIETCPRGNRS---SWQSTWNTQAWVLNVSTWSK 318
SWRW + +VR P S + T + + R +RS S S W T A ++ S K
Sbjct: 531 SWRWYLATVRSLPQSTETDTYQMIQDEMVNAMRDDRSLGCSELSRWLTMAQIMAASFGEK 590
>11_06_0611 + 25461469-25461655,25461670-25462238
Length = 251
Score = 27.5 bits (58), Expect = 8.6
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Frame = +2
Query: 227 GSKRAPGGTAALGNPPGTPRP--GFSMSRR-GANGLNIIPPPK 346
GS G TAA PP P P G + RR GA ++ + PP+
Sbjct: 129 GSGGGEGATAAAVGPPPPPFPQSGLQIWRREGAPTIHAVAPPR 171
>06_03_0794 -
24671955-24672362,24672469-24672505,24672804-24672858,
24674044-24674167,24674670-24674903
Length = 285
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Frame = -3
Query: 321 PFAPRRDI--ENPGLGVPGGLPRAAVP 247
PFAP R + N G+ VPGG+P P
Sbjct: 118 PFAPLRPVIPYNGGVAVPGGIPSTYGP 144
>06_03_0543 + 21967787-21970261
Length = 824
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +2
Query: 290 GFSMSRRGANGLNIIPPPKGENGSRSEWPTLRPGG 394
G ++S G+ G + P+G N SRS +P +P G
Sbjct: 387 GVTLSNFGSTGTMYLKLPEGVNVSRSSFPHSQPLG 421
>06_03_0082 + 16363742-16364632
Length = 296
Score = 27.5 bits (58), Expect = 8.6
Identities = 16/48 (33%), Positives = 20/48 (41%)
Frame = +2
Query: 227 GSKRAPGGTAALGNPPGTPRPGFSMSRRGANGLNIIPPPKGENGSRSE 370
G + GG PP P P S GA+G ++ PPP E E
Sbjct: 158 GGDQFGGGEERPPPPPPPPFPDDSDGGDGASGEDLEPPPLEEEEEEEE 205
>04_04_1104 -
30928475-30928501,30929008-30929110,30929287-30929340,
30929803-30929895,30930063-30930140,30930416-30930527,
30930618-30930756,30930823-30930910,30930984-30931079,
30931675-30931781,30931874-30932009,30932089-30932186,
30932954-30933047,30933132-30933301,30933749-30933819,
30936066-30936194,30936552-30936654,30936764-30936907,
30937123-30937245,30937482-30937563,30939044-30939120,
30939261-30939315,30939365-30939443,30939544-30939620,
30939739-30939869,30939947-30940120,30940245-30940310,
30940937-30941572
Length = 1113
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +2
Query: 254 AALGNPPGTPRPGFSMSRRGANGLNIIPPPKGE 352
AA PP P SRRG G +PPP+ +
Sbjct: 62 AATPAPPAPAAPPPPTSRRGGGGGAALPPPQAQ 94
>02_05_0146 -
26267245-26267339,26267427-26267469,26267589-26267725,
26268172-26268299,26268419-26268495,26268593-26268679,
26268817-26268933,26269115-26269165,26269383-26269497,
26270033-26270292
Length = 369
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = -3
Query: 288 GLGVPGGLPRAAVPPGARFDPFAPP 214
GLG PGG R + PGA D PP
Sbjct: 12 GLGGPGGRLRPSPRPGAYADRLRPP 36
>02_01_0244 +
1603381-1603792,1604054-1604132,1604993-1605862,
1606019-1606276,1606675-1606834
Length = 592
Score = 27.5 bits (58), Expect = 8.6
Identities = 18/71 (25%), Positives = 35/71 (49%)
Frame = -1
Query: 416 IHKIYGQFLLAVTLAIQISIRSLLSGVE*YLTRLLHVETLRTQAWVFQVDCQELRFPRGH 237
+ +++ LL V +IS R+L+ ++ +L + L ++AW+F C E H
Sbjct: 458 LERLFVNLLLEVA-EDEISFRTLVRDLK-TKRPILQIVLLSSKAWLFSGYCYENDMDGSH 515
Query: 236 VSIRLRPPVLV 204
+ L+P V +
Sbjct: 516 GAAHLQPSVKI 526
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,551,714
Number of Sequences: 37544
Number of extensions: 403800
Number of successful extensions: 1526
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 1439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1521
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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