Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0020
(596 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_15904| Best HMM Match : Collagen (HMM E-Value=4.1e-11) 37 0.014
SB_55337| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.076
SB_47949| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.18
SB_59302| Best HMM Match : Collagen (HMM E-Value=0) 32 0.31
SB_51503| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.93
SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.93
SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15) 30 1.2
SB_21796| Best HMM Match : COLFI (HMM E-Value=0) 30 1.2
SB_51467| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_46720| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_29576| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_25350| Best HMM Match : Collagen (HMM E-Value=0) 29 2.9
SB_21936| Best HMM Match : Collagen (HMM E-Value=1.1e-07) 29 2.9
SB_14625| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.056) 29 2.9
SB_3936| Best HMM Match : Collagen (HMM E-Value=7.5e-24) 29 2.9
SB_2570| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_36007| Best HMM Match : Collagen (HMM E-Value=9e-25) 29 3.8
SB_56883| Best HMM Match : RVT_1 (HMM E-Value=7.5e-15) 29 3.8
SB_13021| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_26644| Best HMM Match : Collagen (HMM E-Value=0) 28 5.0
SB_19476| Best HMM Match : Extensin_2 (HMM E-Value=0.014) 28 5.0
SB_32600| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_7731| Best HMM Match : Extensin_2 (HMM E-Value=1.2) 28 5.0
SB_46784| Best HMM Match : LAGLIDADG_1 (HMM E-Value=4.5) 28 6.6
SB_33678| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_25007| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_23055| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_8802| Best HMM Match : WW (HMM E-Value=3.2e-31) 28 6.6
SB_7937| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_1457| Best HMM Match : VHS (HMM E-Value=2e-31) 28 6.6
SB_51776| Best HMM Match : S-antigen (HMM E-Value=0.24) 27 8.7
SB_26060| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
SB_16697| Best HMM Match : Collagen (HMM E-Value=4.2e-11) 27 8.7
SB_11727| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
SB_8467| Best HMM Match : rve (HMM E-Value=2.4e-13) 27 8.7
SB_56923| Best HMM Match : PT (HMM E-Value=0.95) 27 8.7
SB_18300| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
>SB_15904| Best HMM Match : Collagen (HMM E-Value=4.1e-11)
Length = 376
Score = 36.7 bits (81), Expect = 0.014
Identities = 22/59 (37%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Frame = +2
Query: 224 NGSKRAPGGTAALGN--PPGTPRPGFSMSRRGANGLNIIPPPKGENGSRSEWPTLRPGG 394
NGS+ PG + G PPGT P M RG NG P+G G + + PGG
Sbjct: 211 NGSRGPPGPSGPQGQQGPPGTKGPQGFMGPRGHNGTAGQQGPQGPPGPKGDTGPAGPGG 269
>SB_55337| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1853
Score = 34.3 bits (75), Expect = 0.076
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Frame = +2
Query: 233 KRAPGGTAALGN---PPGTPRPGFSMSRRGANGLNIIPPPKGENGSRSE 370
+ P GT+ GN P G P P G NG++ +P KGE GS E
Sbjct: 1089 RMGPPGTSEPGNVPGPKGDPGPAGPRGPAGRNGIDGLPGTKGEPGSLGE 1137
Score = 31.1 bits (67), Expect = 0.71
Identities = 22/47 (46%), Positives = 23/47 (48%), Gaps = 6/47 (12%)
Frame = +2
Query: 269 PPGTP-RPGFSMSRR-----GANGLNIIPPPKGENGSRSEWPTLRPG 391
PPG P RPG R G NGL IP PKG+ G P RPG
Sbjct: 969 PPGLPGRPGLKGERGRDGLDGQNGLPGIPGPKGDTGPVG--PPGRPG 1013
Score = 29.5 bits (63), Expect = 2.2
Identities = 22/63 (34%), Positives = 26/63 (41%), Gaps = 2/63 (3%)
Frame = +2
Query: 224 NGSKRAPGGTAALG--NPPGTPRPGFSMSRRGANGLNIIPPPKGENGSRSEWPTLRPGGT 397
NG PG +G PPG P +G GL +P GE GS P + PGG
Sbjct: 1297 NGLSGIPGERGPVGPAGPPGLPGRAGQAGPKGETGLPGMPGLDGEKGSAGV-PGI-PGGP 1354
Query: 398 AHR 406
R
Sbjct: 1355 GGR 1357
>SB_47949| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 280
Score = 33.1 bits (72), Expect = 0.18
Identities = 20/45 (44%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = -3
Query: 321 PFAPRRDIENPG-LGVPGGLPRAAVPPGARFDPFAPPGVGEPIPG 190
P AP + PG L PGG+P +PP PF PPG P PG
Sbjct: 209 PNAPPGLMPPPGMLPPPGGMPPGRMPPQGL--PFPPPGPIPPPPG 251
>SB_59302| Best HMM Match : Collagen (HMM E-Value=0)
Length = 993
Score = 32.3 bits (70), Expect = 0.31
Identities = 20/57 (35%), Positives = 22/57 (38%)
Frame = +2
Query: 224 NGSKRAPGGTAALGNPPGTPRPGFSMSRRGANGLNIIPPPKGENGSRSEWPTLRPGG 394
NG PG GNP G G + G G N P P G NG E + P G
Sbjct: 567 NGPLGPPGEAGPPGNPGGPGYQGNHGNPAGPQGPNGQPGPPGVNGPPGEIGEIGPAG 623
Score = 29.9 bits (64), Expect = 1.6
Identities = 18/46 (39%), Positives = 20/46 (43%)
Frame = +2
Query: 224 NGSKRAPGGTAALGNPPGTPRPGFSMSRRGANGLNIIPPPKGENGS 361
NG PG +G PPG P P G GL P PKG G+
Sbjct: 182 NGPLGPPGPPGDMG-PPGLPGPQGPQMPPGPPGLPGAPGPKGPPGT 226
Score = 29.5 bits (63), Expect = 2.2
Identities = 18/46 (39%), Positives = 20/46 (43%)
Frame = +2
Query: 224 NGSKRAPGGTAALGNPPGTPRPGFSMSRRGANGLNIIPPPKGENGS 361
NG PG +G PPG P P G GL P PKG G+
Sbjct: 267 NGILGPPGPPGDMG-PPGLPGPPGPQMPPGPPGLPGAPGPKGPPGT 311
Score = 29.1 bits (62), Expect = 2.9
Identities = 18/49 (36%), Positives = 20/49 (40%)
Frame = +2
Query: 224 NGSKRAPGGTAALGNPPGTPRPGFSMSRRGANGLNIIPPPKGENGSRSE 370
NG PG +G PPG P P G GL P P G G+ E
Sbjct: 97 NGVNGPPGELGDMG-PPGPPGPPGPQMPPGPPGLPGPPGPAGPPGTNGE 144
Score = 29.1 bits (62), Expect = 2.9
Identities = 19/57 (33%), Positives = 21/57 (36%)
Frame = +2
Query: 224 NGSKRAPGGTAALGNPPGTPRPGFSMSRRGANGLNIIPPPKGENGSRSEWPTLRPGG 394
NG PG GNP G G + G G N P P G NG + P G
Sbjct: 312 NGPLGPPGDVGPPGNPGGPGYQGNHGNPAGPQGPNGQPGPPGINGPPGPLGDVGPPG 368
Score = 29.1 bits (62), Expect = 2.9
Identities = 19/57 (33%), Positives = 21/57 (36%)
Frame = +2
Query: 224 NGSKRAPGGTAALGNPPGTPRPGFSMSRRGANGLNIIPPPKGENGSRSEWPTLRPGG 394
NG PG GNP G G + G G N P P G NG + P G
Sbjct: 397 NGPLGPPGDVGPPGNPGGPGYQGNHGNPAGPQGPNGQPGPPGINGPPGPLGDVGPPG 453
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/45 (35%), Positives = 18/45 (40%)
Frame = +2
Query: 224 NGSKRAPGGTAALGNPPGTPRPGFSMSRRGANGLNIIPPPKGENG 358
NG PG GNP G G + G G N +P P G G
Sbjct: 142 NGELGPPGDVGPPGNPGGPGLQGNHGNPAGIQGPNGLPGPNGPLG 186
Score = 28.7 bits (61), Expect = 3.8
Identities = 19/57 (33%), Positives = 21/57 (36%)
Frame = +2
Query: 224 NGSKRAPGGTAALGNPPGTPRPGFSMSRRGANGLNIIPPPKGENGSRSEWPTLRPGG 394
NG PG GNP G G + G G N P P G NG + P G
Sbjct: 482 NGPLGPPGEAGPPGNPGGPGYQGNHGNPAGPQGPNGQPGPPGINGPPGPLGDVGPPG 538
Score = 28.7 bits (61), Expect = 3.8
Identities = 18/57 (31%), Positives = 22/57 (38%)
Frame = +2
Query: 224 NGSKRAPGGTAALGNPPGTPRPGFSMSRRGANGLNIIPPPKGENGSRSEWPTLRPGG 394
NG PG + GN G G + G G N P P G NG + + P G
Sbjct: 652 NGPLGPPGESGPAGNAGGVGYQGNHGNPAGVQGPNGQPGPPGINGPPGQIGEMGPPG 708
Score = 28.7 bits (61), Expect = 3.8
Identities = 18/57 (31%), Positives = 22/57 (38%)
Frame = +2
Query: 224 NGSKRAPGGTAALGNPPGTPRPGFSMSRRGANGLNIIPPPKGENGSRSEWPTLRPGG 394
NG PG GN G G + G+ G N P P G NG + + P G
Sbjct: 737 NGPLGPPGECGPAGNAGGVGCQGHHGNPAGSQGPNGQPGPPGINGPPGQVGEMGPPG 793
Score = 28.3 bits (60), Expect = 5.0
Identities = 17/47 (36%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
Frame = -3
Query: 330 IFNPFAPRRDIENPGLGVPGGLPRAAVPPG--ARFDPFAPPGVGEPI 196
I P P D+ PGL P G PPG P PPG+ P+
Sbjct: 439 INGPPGPLGDVGPPGLPGPPGPQMPPGPPGLPGAPGPNGPPGINGPL 485
Score = 28.3 bits (60), Expect = 5.0
Identities = 17/47 (36%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
Frame = -3
Query: 330 IFNPFAPRRDIENPGLGVPGGLPRAAVPPG--ARFDPFAPPGVGEPI 196
I P P D+ PGL P G PPG P PPG+ P+
Sbjct: 524 INGPPGPLGDVGPPGLPGPPGPQMPPGPPGLPGAPGPNGPPGINGPL 570
Score = 27.9 bits (59), Expect = 6.6
Identities = 18/51 (35%), Positives = 20/51 (39%), Gaps = 2/51 (3%)
Frame = -3
Query: 342 GGGMIFNPFAPRRDIENPGLGVPGGLPRAAVPPG--ARFDPFAPPGVGEPI 196
G I P P D+ PGL P G PPG P PPG P+
Sbjct: 265 GPNGILGPPGPPGDMGPPGLPGPPGPQMPPGPPGLPGAPGPKGPPGTNGPL 315
Score = 27.9 bits (59), Expect = 6.6
Identities = 18/57 (31%), Positives = 22/57 (38%)
Frame = +2
Query: 224 NGSKRAPGGTAALGNPPGTPRPGFSMSRRGANGLNIIPPPKGENGSRSEWPTLRPGG 394
NG PG GN G G + G+ G N P P G NG + + P G
Sbjct: 822 NGPLGPPGECGPAGNAGGVGCQGNHGNPAGSQGPNGQPGPPGINGPPGQVGEMGPPG 878
Score = 27.5 bits (58), Expect = 8.7
Identities = 18/53 (33%), Positives = 19/53 (35%)
Frame = -3
Query: 357 PFSPFGGGMIFNPFAPRRDIENPGLGVPGGLPRAAVPPGARFDPFAPPGVGEP 199
P P G P P PGL P G P PPG PPG+ P
Sbjct: 44 PPGPDGPPGFPGPQGPNGPKGPPGLPGPPGPPGFQGPPGNPAGAIGPPGLPGP 96
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/42 (35%), Positives = 17/42 (40%)
Frame = +2
Query: 224 NGSKRAPGGTAALGNPPGTPRPGFSMSRRGANGLNIIPPPKG 349
NG PG GNP G G + G G N +P P G
Sbjct: 227 NGPLGPPGDVGPPGNPGGPGYQGNHGNPAGPQGPNGLPGPNG 268
Score = 27.5 bits (58), Expect = 8.7
Identities = 17/45 (37%), Positives = 19/45 (42%)
Frame = +2
Query: 227 GSKRAPGGTAALGNPPGTPRPGFSMSRRGANGLNIIPPPKGENGS 361
G PG +G PPG P P G GL P PKG G+
Sbjct: 353 GINGPPGPLGDVG-PPGLPGPPGPQMPPGPPGLPGAPGPKGPPGT 396
>SB_51503| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 335
Score = 30.7 bits (66), Expect = 0.93
Identities = 19/54 (35%), Positives = 22/54 (40%)
Frame = +2
Query: 227 GSKRAPGGTAALGNPPGTPRPGFSMSRRGANGLNIIPPPKGENGSRSEWPTLRP 388
G A G GN P P P RRG+ G+ P P GE G + P P
Sbjct: 33 GELGAKGEKGLQGNTPDQPGPP---GRRGSAGMKGEPGPAGEKGMQHRAPRCLP 83
>SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1000
Score = 30.7 bits (66), Expect = 0.93
Identities = 22/68 (32%), Positives = 26/68 (38%), Gaps = 1/68 (1%)
Frame = -3
Query: 390 PGRNVGHSDLDPFSPFGGGMIFNPFAPRRDIENPGLGVPGGLPRAAVPPGARF-DPFAPP 214
P + G S+ SP GG + P P + P G P PPG P PP
Sbjct: 900 PSQTPGGSESPSASPPGGSVPPPPPPPGGNAPLPPPPPGGSAPSQPPPPGGNAPPPPPPP 959
Query: 213 GVGEPIPG 190
G P PG
Sbjct: 960 GGSAPPPG 967
Score = 27.5 bits (58), Expect = 8.7
Identities = 23/71 (32%), Positives = 26/71 (36%)
Frame = -3
Query: 396 VPPGRNVGHSDLDPFSPFGGGMIFNPFAPRRDIENPGLGVPGGLPRAAVPPGARFDPFAP 217
+PP G + P P GG P P PG GG P PPG P P
Sbjct: 932 LPPPPPGGSAPSQPPPP-GGNAPPPPPPPGGSAPPPG----GGAPPLPPPPGGSAPPPPP 986
Query: 216 PGVGEPIPGRR 184
P P P R+
Sbjct: 987 PPPPPPPPMRK 997
>SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15)
Length = 876
Score = 30.3 bits (65), Expect = 1.2
Identities = 20/77 (25%), Positives = 25/77 (32%)
Frame = -3
Query: 429 GVNPDSQDLWAVPPGRNVGHSDLDPFSPFGGGMIFNPFAPRRDIENPGLGVPGGLPRAAV 250
G P Q + PP P + + P + + G PG PR A
Sbjct: 690 GQYPPQQQAYGAPPASVAAPKAYPPPAAAAAPQGYPPSSAPTGYQARGPAPPGAKPRVAA 749
Query: 249 PPGARFDPFAPPGVGEP 199
P GA P AP P
Sbjct: 750 PYGAVPRPGAPAATAPP 766
>SB_21796| Best HMM Match : COLFI (HMM E-Value=0)
Length = 1239
Score = 30.3 bits (65), Expect = 1.2
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = +2
Query: 221 ANGSKRAPGGTAALGNPPGTPRPGFSMSRRGANGLNIIPPPKGENGSRSE 370
A G+K PG +G P PG + G GL + +GE G+R E
Sbjct: 216 AKGAKGQPGPPGLVGEPGPEGEPG-PVGPTGVPGLPGVKGDRGEQGARGE 264
Score = 29.9 bits (64), Expect = 1.6
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = +2
Query: 269 PPGTPRPGFSMSRRGANGLNIIPPPKGENGSR-SEWPTLRPGG 394
PPG P P + + GA G P +GE GS S+ P GG
Sbjct: 103 PPGDPGPKGNKGQPGAQGRPGAPGDRGERGSAGSDGPKGEAGG 145
>SB_51467| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 465
Score = 29.9 bits (64), Expect = 1.6
Identities = 27/75 (36%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
Frame = +3
Query: 195 GWVHQHRGAQTDRNVPPGEPQLLAIHLEHPGL-GSQ--CLDVEQTG*ISFHPRKERTDRD 365
GW H H Q D +V + QL H GL G Q CL + + ++ P KE T R
Sbjct: 5 GWYHSHPSYQADPSVQDIKSQLRYQHALQQGLSGPQEPCLGLIISPYDTYKPTKESTFRA 64
Query: 366 LNGQRYGQEELPIDL 410
QR QE P L
Sbjct: 65 FWVQR-TQEGTPDSL 78
>SB_46720| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1705
Score = 29.5 bits (63), Expect = 2.2
Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = +2
Query: 224 NGSKRAPGGT-AALGNPPGTPRPGFSMSRRGANGLNIIPPPKGENG 358
+G K PG A PPG P P G +G+ P KGE+G
Sbjct: 917 DGDKGPPGPVDAGPRGPPGEPGPPGPFGAAGLDGMPGKPGAKGESG 962
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/45 (35%), Positives = 20/45 (44%)
Frame = +2
Query: 227 GSKRAPGGTAALGNPPGTPRPGFSMSRRGANGLNIIPPPKGENGS 361
G PG +G P G P P S G G +P PKG+ G+
Sbjct: 18 GDAGPPGPEGNMG-PRGQPGPEGSPGLPGERGTGGVPGPKGKQGA 61
>SB_29576| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1202
Score = 29.1 bits (62), Expect = 2.9
Identities = 25/86 (29%), Positives = 33/86 (38%), Gaps = 9/86 (10%)
Frame = -3
Query: 423 NPDSQDLWAVPPGRNVGHSDLDPFSPF--GGGMIFNPFAPRRDIE-NPGLGVPGGLPRAA 253
NP+ + WA ++ S + SPF G N +P I LG GG P
Sbjct: 262 NPNQKTNWATTTPKSGRSSSAELLSPFFAGNNNSSNTISPDSGIHCRDELG--GGTPAFT 319
Query: 252 VPPGA----RFDPFAPPG--VGEPIP 193
PP F P +PP P+P
Sbjct: 320 SPPNTPTTRTFSPISPPAGCAASPVP 345
>SB_25350| Best HMM Match : Collagen (HMM E-Value=0)
Length = 1112
Score = 29.1 bits (62), Expect = 2.9
Identities = 18/50 (36%), Positives = 19/50 (38%)
Frame = +2
Query: 242 PGGTAALGNPPGTPRPGFSMSRRGANGLNIIPPPKGENGSRSEWPTLRPG 391
P G PPG P P G NG+ P GE G P RPG
Sbjct: 661 PPGRPGPPGPPGPPGPSGPSGSNGRNGVKGTPGRDGEPGIPG--PDGRPG 708
Score = 28.7 bits (61), Expect = 3.8
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Frame = +2
Query: 221 ANGSKRAPGGTAALGNPPGTPRPGFSMS--RRGANGLNIIPPPKGENGSRSE 370
A+G + APG + G PG G++GLN P P+G G + E
Sbjct: 532 ASGRRGAPGAKGSRGERGRVGPPGIDGKDGAPGSDGLNGPPGPQGPAGEKGE 583
Score = 27.5 bits (58), Expect = 8.7
Identities = 18/55 (32%), Positives = 21/55 (38%), Gaps = 1/55 (1%)
Frame = +2
Query: 236 RAPGGTAALGNPPGTPRPGFSMSRRGANGLNIIPPPKGENGSRSE-WPTLRPGGT 397
+ P G PPG P RG G + P GE G + E PT G T
Sbjct: 440 QGPQGAPGTQGPPGLPGKTGESGPRGERGTDGKPGAMGERGPQGETGPTGLTGPT 494
>SB_21936| Best HMM Match : Collagen (HMM E-Value=1.1e-07)
Length = 195
Score = 29.1 bits (62), Expect = 2.9
Identities = 20/60 (33%), Positives = 22/60 (36%)
Frame = +2
Query: 224 NGSKRAPGGTAALGNPPGTPRPGFSMSRRGANGLNIIPPPKGENGSRSEWPTLRPGGTAH 403
+G PG G P GTP + R G G P G GSR P GT H
Sbjct: 34 DGKNGIPGIPGVPGKP-GTPGKSGNDGRNGKPGAPGPKGPPGPKGSRGPKGVQGPPGTTH 92
>SB_14625| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.056)
Length = 245
Score = 29.1 bits (62), Expect = 2.9
Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
Frame = -3
Query: 291 PGLGVP---GGLPRAAVPPGARFDPFAPPGVGEP 199
PG+ P GG P PPG P PPG G+P
Sbjct: 204 PGMWGPPPMGGPPPMGGPPGGYPPPPPPPGAGDP 237
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/25 (56%), Positives = 14/25 (56%)
Frame = -3
Query: 282 GVPGGLPRAAVPPGARFDPFAPPGV 208
G PGG P PPGA DP PP V
Sbjct: 220 GPPGGYPPPPPPPGAG-DPAYPPPV 243
>SB_3936| Best HMM Match : Collagen (HMM E-Value=7.5e-24)
Length = 270
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/45 (35%), Positives = 20/45 (44%)
Frame = +2
Query: 227 GSKRAPGGTAALGNPPGTPRPGFSMSRRGANGLNIIPPPKGENGS 361
G PG +G P G P P S G G +P PKG+ G+
Sbjct: 18 GDAGPPGPEGNMG-PRGQPGPEGSPGLPGERGTGGVPGPKGKQGA 61
>SB_2570| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 230
Score = 29.1 bits (62), Expect = 2.9
Identities = 20/60 (33%), Positives = 22/60 (36%)
Frame = +2
Query: 224 NGSKRAPGGTAALGNPPGTPRPGFSMSRRGANGLNIIPPPKGENGSRSEWPTLRPGGTAH 403
+G PG G P GTP + R G G P G GSR P GT H
Sbjct: 34 DGKNGIPGIPGVHGKP-GTPGKSGNDGRNGKPGAPGPKGPPGPKGSRGPKGVQGPPGTTH 92
>SB_36007| Best HMM Match : Collagen (HMM E-Value=9e-25)
Length = 311
Score = 28.7 bits (61), Expect = 3.8
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
Frame = +2
Query: 227 GSKRAPGGTAALGN-----PPGTPRPGFSMSRRGANGLNIIPPPKGENG 358
G +PGG+ G+ PPG+P P RG NG PKG++G
Sbjct: 100 GDPGSPGGSGEAGDKGVDGPPGSPGPQGFNGARGPNG------PKGDSG 142
>SB_56883| Best HMM Match : RVT_1 (HMM E-Value=7.5e-15)
Length = 459
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 82 SIYYIIAYSPEHRLHEHILIKASWRWKVISVRRWPSS 192
S YY +A +PEH+ +K SWR K+ +P+S
Sbjct: 274 SAYYSVAIAPEHQK----FLKFSWRGKIYRYTCFPNS 306
>SB_13021| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 964
Score = 28.7 bits (61), Expect = 3.8
Identities = 24/68 (35%), Positives = 26/68 (38%)
Frame = -3
Query: 393 PPGRNVGHSDLDPFSPFGGGMIFNPFAPRRDIENPGLGVPGGLPRAAVPPGARFDPFAPP 214
PPG G P + GGG P A + PG G G P A G P A
Sbjct: 549 PPGAGQGWGQPPPGAGQGGGPP-PPGAGQGGPPPPGAGQEGPPPPGAGQGGGPPPPGAGQ 607
Query: 213 GVGEPIPG 190
G G P PG
Sbjct: 608 GWGLPPPG 615
>SB_26644| Best HMM Match : Collagen (HMM E-Value=0)
Length = 877
Score = 28.3 bits (60), Expect = 5.0
Identities = 19/57 (33%), Positives = 22/57 (38%)
Frame = +2
Query: 224 NGSKRAPGGTAALGNPPGTPRPGFSMSRRGANGLNIIPPPKGENGSRSEWPTLRPGG 394
NG APG A GNP +G G IP P+G+NG P G
Sbjct: 753 NGEDGAPGSDGAQGNP----------GPQGPTGTRGIPGPQGKNGKMGPTGPRGPSG 799
>SB_19476| Best HMM Match : Extensin_2 (HMM E-Value=0.014)
Length = 366
Score = 28.3 bits (60), Expect = 5.0
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
Frame = -3
Query: 396 VPPGRNVGHSDLDPFSPFGGGMIFNPFAPRRDIENPGLGVPGGLPRAAVPP--GARFDPF 223
VPP R+VG++ + P G + P P+RD + + A VPP A++ P
Sbjct: 173 VPPQRDVGYAPVPPQRDAG----YAPVPPQRDAKYAPVPPQRDAEYAPVPPQRDAKYAPV 228
Query: 222 APP-GVG-EPIPGRR 184
P G P+P +R
Sbjct: 229 PPQRDAGYAPVPPQR 243
>SB_32600| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1572
Score = 28.3 bits (60), Expect = 5.0
Identities = 20/74 (27%), Positives = 27/74 (36%)
Frame = -3
Query: 420 PDSQDLWAVPPGRNVGHSDLDPFSPFGGGMIFNPFAPRRDIENPGLGVPGGLPRAAVPPG 241
PD A+PPG +P++ +P P +P + PG PPG
Sbjct: 364 PDGPYTRALPPG--------EPYARMPPPGATHPRVPSPGASHPRVPPPGAPHPRVPPPG 415
Query: 240 ARFDPFAPPGVGEP 199
A PPG P
Sbjct: 416 ASHQRVRPPGAPHP 429
Score = 27.9 bits (59), Expect = 6.6
Identities = 18/46 (39%), Positives = 19/46 (41%), Gaps = 5/46 (10%)
Frame = -3
Query: 321 PFAPRRDIENPGLGV----PGGLPRAAVPP-GARFDPFAPPGVGEP 199
P AP + PG P G P VPP GA F PPG P
Sbjct: 404 PGAPHPRVPPPGASHQRVRPPGAPHPRVPPPGAPHPRFPPPGAPHP 449
>SB_7731| Best HMM Match : Extensin_2 (HMM E-Value=1.2)
Length = 352
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/28 (50%), Positives = 14/28 (50%)
Frame = -3
Query: 276 PGGLPRAAVPPGARFDPFAPPGVGEPIP 193
PG L PPG P APPGV P P
Sbjct: 174 PGILAPPPAPPGVLAPPPAPPGVLPPPP 201
>SB_46784| Best HMM Match : LAGLIDADG_1 (HMM E-Value=4.5)
Length = 192
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/45 (35%), Positives = 20/45 (44%)
Frame = +2
Query: 221 ANGSKRAPGGTAALGNPPGTPRPGFSMSRRGANGLNIIPPPKGEN 355
+ + P A NPP RP FS++ R L PP GEN
Sbjct: 27 STSTSEQPAFQRACLNPPPYKRPSFSLAGRPTKKL---PPTHGEN 68
>SB_33678| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1308
Score = 27.9 bits (59), Expect = 6.6
Identities = 24/77 (31%), Positives = 31/77 (40%), Gaps = 7/77 (9%)
Frame = -3
Query: 399 AVPPGRNVGHSDLDPFSPFGGGMIFNPFAPRRDIENPGL---GVPG----GLPRAAVPPG 241
++PP + + P S GG F P + + + NPG G PG G P VP
Sbjct: 958 SIPPSQPMAPPSFPP-SSMGG---FPP-SSQPSMYNPGQVQPGYPGAMTPGAPSPGVPSP 1012
Query: 240 ARFDPFAPPGVGEPIPG 190
P PP G P G
Sbjct: 1013 TGLPPSGPPPTGPPADG 1029
>SB_25007| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 146
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/45 (35%), Positives = 20/45 (44%)
Frame = +2
Query: 221 ANGSKRAPGGTAALGNPPGTPRPGFSMSRRGANGLNIIPPPKGEN 355
+ + P A NPP RP FS++ R L PP GEN
Sbjct: 27 STSTSEQPAFQRACLNPPPYKRPSFSLAGRPTKKL---PPTHGEN 68
>SB_23055| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 377
Score = 27.9 bits (59), Expect = 6.6
Identities = 15/37 (40%), Positives = 16/37 (43%)
Frame = +2
Query: 248 GTAALGNPPGTPRPGFSMSRRGANGLNIIPPPKGENG 358
GT PG P P G NGLN IP G+ G
Sbjct: 125 GTHGKNGIPGHPGPPGPSGPPGRNGLNGIPGVSGKQG 161
>SB_8802| Best HMM Match : WW (HMM E-Value=3.2e-31)
Length = 662
Score = 27.9 bits (59), Expect = 6.6
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = -3
Query: 321 PFAPRRDIENPGLGVPGGLPRAAVPPGARFDPFAPPGVGEPIPG 190
P P + PG+ PG LP +PP PG+ P+PG
Sbjct: 363 PGMPPMALSLPGMPPPGLLPPPGMPPRLPIPGLGLPGM--PLPG 404
>SB_7937| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 618
Score = 27.9 bits (59), Expect = 6.6
Identities = 19/53 (35%), Positives = 21/53 (39%), Gaps = 2/53 (3%)
Frame = -3
Query: 363 LDPFSPFGGGMIFNPFAPRRDI-ENP-GLGVPGGLPRAAVPPGARFDPFAPPG 211
LD G G P+ D P G+G G PR PPG PF P G
Sbjct: 371 LDSMRDMGPGFPPRGMPPKEDWGPGPRGMGPGMGPPRPMGPPGPHGPPFGPRG 423
>SB_1457| Best HMM Match : VHS (HMM E-Value=2e-31)
Length = 892
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = -3
Query: 312 PRRDIENPGLGVPGGLPRAAVPPGARFDPFAPPG 211
P + + PG G P P PP A+ P APPG
Sbjct: 786 PNQGGQQPGYGAP---PTQGGPPQAQPPPHAPPG 816
>SB_51776| Best HMM Match : S-antigen (HMM E-Value=0.24)
Length = 1669
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/54 (27%), Positives = 20/54 (37%)
Frame = -3
Query: 354 FSPFGGGMIFNPFAPRRDIENPGLGVPGGLPRAAVPPGARFDPFAPPGVGEPIP 193
+S +F+ RR + G PG PP R PG+G IP
Sbjct: 1545 YSTMSLSRMFSKLKARRGESSSDDGCPGNPTSIPCPPAVRVYTSVSPGIGRIIP 1598
>SB_26060| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2671
Score = 27.5 bits (58), Expect = 8.7
Identities = 17/48 (35%), Positives = 20/48 (41%), Gaps = 9/48 (18%)
Frame = -2
Query: 313 STSRH*EPRPGCSRWIAKSCGSPG---------GTFRSVCAPRCW*TH 197
ST R+ + PG W+ KS G G RSVC P W H
Sbjct: 1758 STERNSDKSPGLHCWVRKSRLPKGRRKSKRIQCGRLRSVCTPSVWENH 1805
>SB_16697| Best HMM Match : Collagen (HMM E-Value=4.2e-11)
Length = 1903
Score = 27.5 bits (58), Expect = 8.7
Identities = 26/76 (34%), Positives = 29/76 (38%), Gaps = 6/76 (7%)
Frame = -3
Query: 399 AVPPGRNVGHSDLDPFSPFGGGMIFNPFAPRRDIENPGLGVPGGLP----RAAVPPGARF 232
A PP P P G P P+ PGL P G+P A PPG R
Sbjct: 1661 APPPPPPPAPGPPGPDGPMGLPGPQGPDGPKGPPGPPGLPGPQGIPGYPGAPAGPPG-RD 1719
Query: 231 DPFAPPGV--GEPIPG 190
P PPG G+ PG
Sbjct: 1720 GPMGPPGPSGGQGPPG 1735
>SB_11727| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1261
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/58 (24%), Positives = 27/58 (46%)
Frame = +1
Query: 133 ILIKASWRWKVISVRRWPSSRDGFTNTGGRKRIETCPRGNRSSWQSTWNTQAWVLNVS 306
+L WR K+ + + S DG T G + P+G++ S + +Q+ + V+
Sbjct: 720 LLFHPDWRRKLCTTNQKRSGIDGSTPQGSQSGASDTPQGSQGSTNTPQGSQSGLAYVA 777
>SB_8467| Best HMM Match : rve (HMM E-Value=2.4e-13)
Length = 347
Score = 27.5 bits (58), Expect = 8.7
Identities = 24/73 (32%), Positives = 32/73 (43%)
Frame = -1
Query: 443 PDPDPELIPIHKIYGQFLLAVTLAIQISIRSLLSGVE*YLTRLLHVETLRTQAWVFQVDC 264
PDPD L P H I+G+ L TLA ++ + S H+ L QAW + D
Sbjct: 163 PDPDCSLPPAHIIFGR-PLRDTLAF-VNRQEKFSNP--------HIRPLWRQAWAAKEDA 212
Query: 263 QELRFPRGHVSIR 225
R R S+R
Sbjct: 213 LRTRISRTTESLR 225
>SB_56923| Best HMM Match : PT (HMM E-Value=0.95)
Length = 441
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/43 (34%), Positives = 18/43 (41%)
Frame = -3
Query: 390 PGRNVGHSDLDPFSPFGGGMIFNPFAPRRDIENPGLGVPGGLP 262
P R+ H DPFSP +PF P + P GLP
Sbjct: 327 PARSPPHVQCDPFSPTSSAGHPSPFPSPIGSHGPSIS-PAGLP 368
>SB_18300| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 365
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/33 (48%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Frame = +1
Query: 187 SSRDG--FTNTGGRKRIETCPRGNRSSWQSTWN 279
SSR G T R T PRG SSW+ST N
Sbjct: 115 SSRPGTPVKGTNSRTSRHTQPRGTLSSWESTPN 147
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,572,263
Number of Sequences: 59808
Number of extensions: 427610
Number of successful extensions: 1433
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 1118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1382
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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