Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0020
         (596 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   1.7  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   5.3  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    21   6.9  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +1

Query: 235 TCPRGNRSSWQSTWNTQA 288
           TCP G +     TWNT A
Sbjct: 760 TCPAGCKCYNDRTWNTNA 777


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 10/38 (26%), Positives = 16/38 (42%)
 Frame = +1

Query: 148 SWRWKVISVRRWPSSRDGFTNTGGRKRIETCPRGNRSS 261
           +W  K   +   P   +    T G   +ETC R + +S
Sbjct: 189 NWEHKETHIDWQPEDEECTEATAGAVVLETCQRNSNNS 226


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 263 GNPPGTPRPGFSMSRRGANG 322
           G+P  TP P ++ ++ GA G
Sbjct: 105 GSPKLTPYPNWAQNKAGACG 124


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,916
Number of Sequences: 438
Number of extensions: 4061
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)