Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0019
(724 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1834.01 |sup45||translation release factor eRF1|Schizosaccha... 186 2e-48
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr... 29 0.89
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c... 27 2.1
SPBC13E7.11 ||SPBC30D10.19c|mitochondrial rhomboid protease|Schi... 27 2.1
SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces pomb... 27 3.6
SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe... 27 3.6
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe... 27 3.6
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe... 27 3.6
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe... 27 3.6
SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog Mde5|S... 25 8.3
>SPAC1834.01 |sup45||translation release factor
eRF1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 433
Score = 186 bits (454), Expect = 2e-48
Identities = 89/127 (70%), Positives = 105/127 (82%)
Frame = +2
Query: 344 MSEESSADRNVEIWKIKKLIKSLEMARGNGTSMISLIIPPKDQISRVSKMLADEFGTASN 523
MSE +A++ +EIWKI++L+K L GNGTSMI+LIIPP +QISR S MLA+E+GTASN
Sbjct: 1 MSE--TAEKAIEIWKIRRLVKQLINCHGNGTSMITLIIPPGEQISRYSNMLAEEYGTASN 58
Query: 524 IKSRVNRLSVLGAITSVQHRLKLYTKVPPNGLVIYCGTIVTEEGKEKKVNIDFEPFKPIN 703
IKSRVNRLSVL AITS + RLKLY KVP NGLVIYCG ++ E K +K+NIDFEPFKPIN
Sbjct: 59 IKSRVNRLSVLSAITSTRERLKLYNKVPDNGLVIYCGEVIMEGNKTRKLNIDFEPFKPIN 118
Query: 704 TSLYLCD 724
TS YLCD
Sbjct: 119 TSQYLCD 125
>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 749
Score = 28.7 bits (61), Expect = 0.89
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Frame = +2
Query: 323 LNKKRNKMSEE--SSADRNVEIWKIKKLIKSLEMARGNGTSMISLIIPPKDQISRVSKML 496
LN+ N +S SSAD +E W K I S + +R TS S + P + + L
Sbjct: 10 LNRLNNGLSSNNGSSADEGLEHWNPLKKIHSADSSRRRSTS--SQLNQPSNY--HMHSSL 65
Query: 497 ADEFGTASNIKSRVNRL 547
+E S+I S +R+
Sbjct: 66 HEEVSVGSSIASPSSRI 82
>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1717
Score = 27.5 bits (58), Expect = 2.1
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +2
Query: 617 LVIYCGTIVTEEGKEKKVNIDFEPFKPIN 703
L ++ VT+EGKEK + I E F+ I+
Sbjct: 619 LSLWTACCVTDEGKEKNIKIAVEIFREIS 647
>SPBC13E7.11 ||SPBC30D10.19c|mitochondrial rhomboid
protease|Schizosaccharomyces pombe|chr 2|||Manual
Length = 298
Score = 27.5 bits (58), Expect = 2.1
Identities = 22/80 (27%), Positives = 32/80 (40%), Gaps = 5/80 (6%)
Frame = +2
Query: 494 LADEFGTASNIKSRVNRLSVLGAITSVQHRLKLYTKVPPNGL----VIYCGTIVTEE-GK 658
+ D FG + ++ + + + HRL+ TKV P L IY T
Sbjct: 149 IVDVFGNNQFVAFYISSILFSNVASLLHHRLRFGTKVTPGSLGASGAIYAIAAATSYFFP 208
Query: 659 EKKVNIDFEPFKPINTSLYL 718
V+I F PF PI + L
Sbjct: 209 NASVSIIFLPFIPIKIGVAL 228
>SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 440
Score = 26.6 bits (56), Expect = 3.6
Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
Frame = -1
Query: 343 FVSLFI*LINHKHYIC-INN*NNVF-AQHQN 257
F + F+ L +HK+YIC + N NN++ QH +
Sbjct: 197 FSTKFVALSSHKNYICGLTNDNNLYILQHSH 227
>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 26.6 bits (56), Expect = 3.6
Identities = 9/28 (32%), Positives = 19/28 (67%)
Frame = +3
Query: 453 SFHLRIKSREYQRCWLMNLVQLPISSHV 536
S+ R R+YQ CW+++++ +S++V
Sbjct: 2 SWFYRFFIRDYQNCWMVSIMGTGLSANV 29
>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 26.6 bits (56), Expect = 3.6
Identities = 9/28 (32%), Positives = 19/28 (67%)
Frame = +3
Query: 453 SFHLRIKSREYQRCWLMNLVQLPISSHV 536
S+ R R+YQ CW+++++ +S++V
Sbjct: 2 SWFYRFFIRDYQNCWMVSIMGTGLSANV 29
>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 26.6 bits (56), Expect = 3.6
Identities = 9/28 (32%), Positives = 19/28 (67%)
Frame = +3
Query: 453 SFHLRIKSREYQRCWLMNLVQLPISSHV 536
S+ R R+YQ CW+++++ +S++V
Sbjct: 2 SWFYRFFIRDYQNCWMVSIMGTGLSANV 29
>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 26.6 bits (56), Expect = 3.6
Identities = 9/28 (32%), Positives = 19/28 (67%)
Frame = +3
Query: 453 SFHLRIKSREYQRCWLMNLVQLPISSHV 536
S+ R R+YQ CW+++++ +S++V
Sbjct: 2 SWFYRFFIRDYQNCWMVSIMGTGLSANV 29
>SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog
Mde5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 513
Score = 25.4 bits (53), Expect = 8.3
Identities = 12/45 (26%), Positives = 20/45 (44%)
Frame = +2
Query: 575 QHRLKLYTKVPPNGLVIYCGTIVTEEGKEKKVNIDFEPFKPINTS 709
Q + L + G+ + T+V G NID+ ++P N S
Sbjct: 120 QDLIDLADALHDRGMYLMVDTVVNHMGSSDPRNIDYGIYRPFNQS 164
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,001,303
Number of Sequences: 5004
Number of extensions: 62021
Number of successful extensions: 175
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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