Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0019
(724 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1085 - 23851852-23853165 219 1e-57
03_05_0830 + 28034179-28035492 219 2e-57
01_07_0127 + 41234826-41236136 213 1e-55
02_05_0629 + 30475493-30475674,30477091-30477125,30477566-304777... 31 0.93
08_01_0343 - 3025577-3025810,3026428-3026505,3026630-3026748,302... 30 1.6
01_01_0453 - 3361460-3361549,3361660-3361846,3362038-3362139,336... 30 1.6
10_01_0353 + 3882691-3882937,3883216-3883320,3883780-3883907 28 6.5
07_03_1578 + 27872636-27872840,27872928-27873175,27873215-278732... 28 6.5
12_02_0966 - 24906361-24906958,24907084-24907250,24907403-249076... 28 8.6
01_01_0953 - 7472173-7472178,7472216-7472311,7472370-7472462,747... 28 8.6
>07_03_1085 - 23851852-23853165
Length = 437
Score = 219 bits (536), Expect = 1e-57
Identities = 103/127 (81%), Positives = 113/127 (88%)
Frame = +2
Query: 344 MSEESSADRNVEIWKIKKLIKSLEMARGNGTSMISLIIPPKDQISRVSKMLADEFGTASN 523
MS+ DRN+EIWKIKKLIK+LE ARGNGTSMISLI+PP+DQI+RV+KML DE+GTASN
Sbjct: 1 MSDSHETDRNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQIARVAKMLGDEYGTASN 60
Query: 524 IKSRVNRLSVLGAITSVQHRLKLYTKVPPNGLVIYCGTIVTEEGKEKKVNIDFEPFKPIN 703
IKSRVNR SVL AITS Q RLKLY KVPPNGLV+Y GTIVTE+GKEKKV IDFEPFKPIN
Sbjct: 61 IKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTIVTEDGKEKKVTIDFEPFKPIN 120
Query: 704 TSLYLCD 724
SLYLCD
Sbjct: 121 VSLYLCD 127
>03_05_0830 + 28034179-28035492
Length = 437
Score = 219 bits (534), Expect = 2e-57
Identities = 102/127 (80%), Positives = 113/127 (88%)
Frame = +2
Query: 344 MSEESSADRNVEIWKIKKLIKSLEMARGNGTSMISLIIPPKDQISRVSKMLADEFGTASN 523
MS+ D+N+EIWKIKKLIK+LE ARGNGTSMISLI+PP+DQ+SRV+KML DE+GTASN
Sbjct: 1 MSDGQETDKNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQVSRVTKMLGDEYGTASN 60
Query: 524 IKSRVNRLSVLGAITSVQHRLKLYTKVPPNGLVIYCGTIVTEEGKEKKVNIDFEPFKPIN 703
IKSRVNR SVL AITS Q RLKLY KVPPNGLV+Y GTIVTE+GKEKKV IDFEPFKPIN
Sbjct: 61 IKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTIVTEDGKEKKVTIDFEPFKPIN 120
Query: 704 TSLYLCD 724
SLYLCD
Sbjct: 121 ASLYLCD 127
>01_07_0127 + 41234826-41236136
Length = 436
Score = 213 bits (520), Expect = 1e-55
Identities = 96/127 (75%), Positives = 112/127 (88%)
Frame = +2
Query: 344 MSEESSADRNVEIWKIKKLIKSLEMARGNGTSMISLIIPPKDQISRVSKMLADEFGTASN 523
M++ D+N+EIWK+KKLIK L+ ARGNGTSMISLI+PP+DQ+SRV+KML DE+GTASN
Sbjct: 1 MADSHETDKNIEIWKVKKLIKGLDAARGNGTSMISLIMPPRDQVSRVTKMLGDEYGTASN 60
Query: 524 IKSRVNRLSVLGAITSVQHRLKLYTKVPPNGLVIYCGTIVTEEGKEKKVNIDFEPFKPIN 703
IKSRVNR SVL AITS Q RLKLY +VPPNGLV+Y GTIVT+EGKEKKV +DFEPF+PIN
Sbjct: 61 IKSRVNRQSVLAAITSAQQRLKLYNRVPPNGLVLYTGTIVTDEGKEKKVTVDFEPFRPIN 120
Query: 704 TSLYLCD 724
SLYLCD
Sbjct: 121 ASLYLCD 127
>02_05_0629 +
30475493-30475674,30477091-30477125,30477566-30477724,
30478558-30478568,30479669-30479730,30480166-30480265,
30480495-30480770
Length = 274
Score = 31.1 bits (67), Expect = 0.93
Identities = 16/43 (37%), Positives = 25/43 (58%)
Frame = +2
Query: 575 QHRLKLYTKVPPNGLVIYCGTIVTEEGKEKKVNIDFEPFKPIN 703
Q +L+LY KV L+ C ++T K+ K +DF F+P+N
Sbjct: 203 QQKLELYNKVRCKILLETCDYMLTHYPKQLKEQLDFS-FRPVN 244
>08_01_0343 -
3025577-3025810,3026428-3026505,3026630-3026748,
3027566-3027645,3028034-3028107,3028536-3028620,
3028704-3028789,3028968-3029038,3029126-3029207,
3029490-3029531,3029552-3029584,3029699-3029794,
3030163-3030414,3030970-3031149,3032079-3032119,
3032341-3032470,3032504-3032606,3032686-3032773,
3033151-3033304,3033688-3033739,3033815-3033894,
3034478-3034789,3034886-3034955,3035033-3035100,
3035405-3035678,3036408-3036580,3037036-3037128,
3037228-3037443
Length = 1121
Score = 30.3 bits (65), Expect = 1.6
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Frame = +2
Query: 407 SLEMARGNGTSMISLIIPPKDQISRVSKMLADEFGTASNIKSRVNRLSVLGAITS-VQHR 583
SLE + G G S+ + + ++ + L+ +FG ++++ + L VL +I S +Q
Sbjct: 134 SLEGSCGKGLSVRKTALDTVSECLQILRFLSKDFGGSTSLPENAHLLRVLISIVSCLQSE 193
Query: 584 LKLYTKVPPNG 616
L L K PNG
Sbjct: 194 LNLTDK--PNG 202
>01_01_0453 -
3361460-3361549,3361660-3361846,3362038-3362139,
3362239-3362306,3362976-3363175,3363253-3363595,
3363837-3363893,3364011-3364727,3364805-3365007,
3365171-3365297
Length = 697
Score = 30.3 bits (65), Expect = 1.6
Identities = 15/41 (36%), Positives = 25/41 (60%)
Frame = +2
Query: 293 YTNIVFVVN*LNKKRNKMSEESSADRNVEIWKIKKLIKSLE 415
Y + ++N L+KK +M E+ D + EI +KKL+K +E
Sbjct: 347 YAELYQIINDLSKKTEEM-EKMKVDSDQEILLLKKLVKVME 386
>10_01_0353 + 3882691-3882937,3883216-3883320,3883780-3883907
Length = 159
Score = 28.3 bits (60), Expect = 6.5
Identities = 15/46 (32%), Positives = 27/46 (58%)
Frame = +2
Query: 365 DRNVEIWKIKKLIKSLEMARGNGTSMISLIIPPKDQISRVSKMLAD 502
+R++E+W+I K ++ A+ TS ISL+ +++RVS D
Sbjct: 93 ERDLEVWRISKEVQVNMEAQTKSTSRISLL----GEVNRVSTRTVD 134
>07_03_1578 +
27872636-27872840,27872928-27873175,27873215-27873295,
27873665-27873822,27874391-27874450,27874655-27874873,
27875100-27875201,27875352-27875500,27875582-27875734,
27875839-27876194
Length = 576
Score = 28.3 bits (60), Expect = 6.5
Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Frame = +2
Query: 386 KIKKLIKSLEMARGNGTSMISLIIPPKDQISRVSKMLADEFGTASNI-KSRVNRLSVLGA 562
K K+++++ + + GN ++ S+I + L G+ SN+ K + L +LGA
Sbjct: 301 KAKEIVEAAKASMGNYNTICSII--------ELGARLISHAGSLSNLAKCAASTLQILGA 352
Query: 563 ITSVQHRLKLYTKVPPNGLVIYCGTI 640
++ LK P GL+ + I
Sbjct: 353 EKALFRALKTRGNTPKYGLIFHSSFI 378
>12_02_0966 -
24906361-24906958,24907084-24907250,24907403-24907650,
24907824-24908001,24908196-24908372,24908459-24908563,
24908633-24908770,24909757-24910836
Length = 896
Score = 27.9 bits (59), Expect = 8.6
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +2
Query: 269 CKDIILVIYTNIVFVVN*LNKKRNKMSEESSADR 370
C+D+ L+I +NI + L + R + EE+ ADR
Sbjct: 515 CEDLRLIIQSNIYNYLGILLEGRERFEEEAIADR 548
>01_01_0953 - 7472173-7472178,7472216-7472311,7472370-7472462,
7472855-7473019,7473689-7474821,7474902-7475426,
7477077-7477249,7478737-7478831,7478893-7481688
Length = 1693
Score = 27.9 bits (59), Expect = 8.6
Identities = 14/42 (33%), Positives = 26/42 (61%)
Frame = +2
Query: 377 EIWKIKKLIKSLEMARGNGTSMISLIIPPKDQISRVSKMLAD 502
E+ +++KL+ S+E+ GNG M++ +D +S V+ L D
Sbjct: 1125 EVKELEKLVDSIEVDIGNGGKMMA---SDEDPVSEVNSKLRD 1163
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,565,475
Number of Sequences: 37544
Number of extensions: 372774
Number of successful extensions: 908
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 908
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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