Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0019
(724 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_3577| Best HMM Match : No HMM Matches (HMM E-Value=.) 237 5e-63
SB_4034| Best HMM Match : Exo_endo_phos (HMM E-Value=9.7e-06) 32 0.41
SB_5302| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.95
SB_56329| Best HMM Match : DUF112 (HMM E-Value=4.3) 31 1.2
SB_16338| Best HMM Match : PHD (HMM E-Value=3.8e-08) 30 1.7
SB_46444| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.2
SB_45459| Best HMM Match : RVT_1 (HMM E-Value=6e-36) 29 3.8
SB_925| Best HMM Match : Rick_17kDa_Anti (HMM E-Value=0.62) 29 3.8
SB_17219| Best HMM Match : Put_Phosphatase (HMM E-Value=5.7) 29 5.0
SB_10537| Best HMM Match : CTP_transf_2 (HMM E-Value=0) 28 8.8
>SB_3577| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1164
Score = 237 bits (581), Expect = 5e-63
Identities = 113/122 (92%), Positives = 119/122 (97%)
Frame = +2
Query: 359 SADRNVEIWKIKKLIKSLEMARGNGTSMISLIIPPKDQISRVSKMLADEFGTASNIKSRV 538
+ADRNVEIWKIKKLIKSLE ARGNGTSMISLIIPPKDQISRV+KMLADEFGTASNIKSRV
Sbjct: 784 AADRNVEIWKIKKLIKSLEAARGNGTSMISLIIPPKDQISRVAKMLADEFGTASNIKSRV 843
Query: 539 NRLSVLGAITSVQHRLKLYTKVPPNGLVIYCGTIVTEEGKEKKVNIDFEPFKPINTSLYL 718
NRLSVL AITSVQ RLKLY+KVPPNGLV+YCGTIVT++GKEKKVNIDFEPFKPINTSLYL
Sbjct: 844 NRLSVLSAITSVQQRLKLYSKVPPNGLVVYCGTIVTDDGKEKKVNIDFEPFKPINTSLYL 903
Query: 719 CD 724
CD
Sbjct: 904 CD 905
>SB_4034| Best HMM Match : Exo_endo_phos (HMM E-Value=9.7e-06)
Length = 609
Score = 32.3 bits (70), Expect = 0.41
Identities = 14/26 (53%), Positives = 19/26 (73%)
Frame = -1
Query: 724 VAEIKRCVDRLERLKINVHFLLLTFF 647
V E+KR DR+ +KINV F++LT F
Sbjct: 120 VLEVKRISDRICAIKINVGFIILTIF 145
>SB_5302| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 949
Score = 31.1 bits (67), Expect = 0.95
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = -1
Query: 724 VAEIKRCVDRLERLKINVHFLLLTFF 647
V E+KR DR+ +KINV F +LT F
Sbjct: 120 VLEVKRISDRICAIKINVGFTILTIF 145
>SB_56329| Best HMM Match : DUF112 (HMM E-Value=4.3)
Length = 573
Score = 30.7 bits (66), Expect = 1.2
Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 8/92 (8%)
Frame = -2
Query: 711 RDVLIGLNGSKSMFTFFSLPSSV------TIVPQYITRPFGGTLVYSLSRCCTEVIAPST 550
RD ++G + F+ +L ++V +I+P Y FG V+ SR I
Sbjct: 283 RDAMVGCTKQEKWFSL-TLTAAVFFGDFLSIIPGYGIDRFGARQVFIASRHVITTIPSMH 341
Query: 549 ERRFTRD--LILEAVPNSSANIFDTLEI*SLG 460
R+ RD +L + S AN F +++ S+G
Sbjct: 342 RARYIRDSGSLLSSAVESYANYFGIIQLCSIG 373
>SB_16338| Best HMM Match : PHD (HMM E-Value=3.8e-08)
Length = 652
Score = 30.3 bits (65), Expect = 1.7
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = -1
Query: 724 VAEIKRCVDRLERLKINVHFLLLTFF 647
V E+KR DR+ +KINV F +LT F
Sbjct: 120 VLEVKRISDRICAMKINVGFTILTTF 145
>SB_46444| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 725
Score = 29.9 bits (64), Expect = 2.2
Identities = 16/40 (40%), Positives = 25/40 (62%)
Frame = +2
Query: 350 EESSADRNVEIWKIKKLIKSLEMARGNGTSMISLIIPPKD 469
+ES+AD E W+I+KL+K L+ GN T+ I + +D
Sbjct: 150 QESNADLPSEYWQIQKLVKYLK--GGNQTATIIALCAMRD 187
>SB_45459| Best HMM Match : RVT_1 (HMM E-Value=6e-36)
Length = 1346
Score = 29.1 bits (62), Expect = 3.8
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = -1
Query: 724 VAEIKRCVDRLERLKINVHFLLLTFF 647
V E+KR +R+ +KINV F +LT F
Sbjct: 590 VLEVKRISNRICAIKINVGFTILTIF 615
>SB_925| Best HMM Match : Rick_17kDa_Anti (HMM E-Value=0.62)
Length = 180
Score = 29.1 bits (62), Expect = 3.8
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = -2
Query: 660 SLPSSVTIVPQYITRPFGGTLVYSLSRCCTEVIAPST 550
+LP ++ +V I +P G+L +S C TE+I P++
Sbjct: 144 TLPLTLPLVLCAIAKPSHGSLRSLISNCSTEIITPNS 180
>SB_17219| Best HMM Match : Put_Phosphatase (HMM E-Value=5.7)
Length = 500
Score = 28.7 bits (61), Expect = 5.0
Identities = 13/27 (48%), Positives = 21/27 (77%)
Frame = +2
Query: 323 LNKKRNKMSEESSADRNVEIWKIKKLI 403
L +K++ MSE S+ DR+VE W++K +I
Sbjct: 107 LKRKKDVMSE-SAIDRSVEEWELKNVI 132
>SB_10537| Best HMM Match : CTP_transf_2 (HMM E-Value=0)
Length = 816
Score = 27.9 bits (59), Expect = 8.8
Identities = 10/36 (27%), Positives = 20/36 (55%)
Frame = +1
Query: 106 KKKSPSNRRRKCKLESVIGVARCLVRPVQTRLGQFE 213
KKK+ R+ C ++ + C RP+ +R+ ++E
Sbjct: 720 KKKTNVERKNICVNHDIVYIVICSGRPIDSRINKYE 755
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,094,592
Number of Sequences: 59808
Number of extensions: 444289
Number of successful extensions: 1162
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1065
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1160
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1925890720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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