Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0019
         (724 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016452-11|AAB66012.1|  443|Caenorhabditis elegans Hypothetical...   229   2e-60
J05274-1|AAA27984.1|  360|Caenorhabditis elegans protein ( C.ele...    32   0.36 
AF067211-13|AAC16993.1|  360|Caenorhabditis elegans Protein kina...    32   0.36 
AC006607-6|AAF60370.2|  496|Caenorhabditis elegans Hypothetical ...    30   1.5  
AC024799-9|AAK72312.1|  293|Caenorhabditis elegans Hypothetical ...    29   3.4  
Z71186-4|CAA94916.1|  867|Caenorhabditis elegans Hypothetical pr...    28   5.9  
AL132949-35|CAI70419.1|  466|Caenorhabditis elegans Hypothetical...    28   5.9  
AL132949-34|CAB61101.3|  574|Caenorhabditis elegans Hypothetical...    28   5.9  
AL021497-8|CAA16409.1|  334|Caenorhabditis elegans Hypothetical ...    28   7.8  

>AF016452-11|AAB66012.1|  443|Caenorhabditis elegans Hypothetical
           protein T05H4.6 protein.
          Length = 443

 Score =  229 bits (559), Expect = 2e-60
 Identities = 105/124 (84%), Positives = 119/124 (95%)
 Frame = +2

Query: 353 ESSADRNVEIWKIKKLIKSLEMARGNGTSMISLIIPPKDQISRVSKMLADEFGTASNIKS 532
           + +ADRNVE+WKIK+LIKSLE+ARGNGTSMISLIIPPKDQ++R+ +MLA+E+GTASNIKS
Sbjct: 13  DDAADRNVEMWKIKRLIKSLELARGNGTSMISLIIPPKDQVARIQRMLAEEYGTASNIKS 72

Query: 533 RVNRLSVLGAITSVQHRLKLYTKVPPNGLVIYCGTIVTEEGKEKKVNIDFEPFKPINTSL 712
           RVNRLSVLGAITSVQ RLKLY KVPPNGLV+YCGTI+T+EGKEKKVNIDFEPFK INTSL
Sbjct: 73  RVNRLSVLGAITSVQGRLKLYNKVPPNGLVVYCGTIMTDEGKEKKVNIDFEPFKAINTSL 132

Query: 713 YLCD 724
           YLCD
Sbjct: 133 YLCD 136


>J05274-1|AAA27984.1|  360|Caenorhabditis elegans protein (
           C.elegans casein kinaseII-alpha gene, complete cds. ).
          Length = 360

 Score = 32.3 bits (70), Expect = 0.36
 Identities = 22/55 (40%), Positives = 31/55 (56%)
 Frame = +2

Query: 386 KIKKLIKSLEMARGNGTSMISLIIPPKDQISRVSKMLADEFGTASNIKSRVNRLS 550
           KIK+ IK LE  RG GT++I+L+   KD ISR   ++ +     S+ K     LS
Sbjct: 76  KIKREIKILENLRG-GTNIITLLDVVKDPISRTPALIFEHVNN-SDFKQLYQTLS 128


>AF067211-13|AAC16993.1|  360|Caenorhabditis elegans Protein kinase
           protein 3 protein.
          Length = 360

 Score = 32.3 bits (70), Expect = 0.36
 Identities = 22/55 (40%), Positives = 31/55 (56%)
 Frame = +2

Query: 386 KIKKLIKSLEMARGNGTSMISLIIPPKDQISRVSKMLADEFGTASNIKSRVNRLS 550
           KIK+ IK LE  RG GT++I+L+   KD ISR   ++ +     S+ K     LS
Sbjct: 76  KIKREIKILENLRG-GTNIITLLDVVKDPISRTPALIFEHVNN-SDFKQLYQTLS 128


>AC006607-6|AAF60370.2|  496|Caenorhabditis elegans Hypothetical
           protein C09E7.5 protein.
          Length = 496

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 22/80 (27%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
 Frame = +2

Query: 326 NKKRNKMSEESSADRNVEIWKIKKLIKSLEMARGNGTSMISLIIPPKDQISRVSKMLADE 505
           NKKR++ S+++   +N EI  +KK + SL  ++    +M S I     +++   K L + 
Sbjct: 124 NKKRDEASKKTLNSKNEEIEHLKKRVISLSNSQSENETMKSKI----SKLTESEKKLKET 179

Query: 506 FGTASNIKSRVN-RLSVLGA 562
            G  +  +++++ R+S L A
Sbjct: 180 NGKVTKSRNQLSERVSELEA 199


>AC024799-9|AAK72312.1|  293|Caenorhabditis elegans Hypothetical
           protein Y49C4A.1 protein.
          Length = 293

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -1

Query: 154 HFLVYIYVCGCSDFSSCAGILGFFLI 77
           HFL+      CS+ ++C  I+ FF++
Sbjct: 79  HFLIVYLALPCSNIAACRSIIAFFIV 104


>Z71186-4|CAA94916.1|  867|Caenorhabditis elegans Hypothetical
           protein F23D12.5 protein.
          Length = 867

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +1

Query: 382 MEDKETYKELGNGQRKWNIYDIPDHST*GSNLESIKDVG 498
           M DK T + LGN    ++   +        N ES+KD+G
Sbjct: 476 MNDKNTVQRLGNAWAVFDFEGVTQLRDFAKNYESLKDIG 514


>AL132949-35|CAI70419.1|  466|Caenorhabditis elegans Hypothetical
           protein Y53F4B.27b protein.
          Length = 466

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 10/24 (41%), Positives = 19/24 (79%)
 Frame = +2

Query: 56  HMLRGNRNKKKSKNPRTRRKVRAT 127
           H ++GN  KK++K+ +TR+K R++
Sbjct: 84  HEVQGNVTKKRTKHSKTRQKARSS 107


>AL132949-34|CAB61101.3|  574|Caenorhabditis elegans Hypothetical
           protein Y53F4B.27a protein.
          Length = 574

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 10/24 (41%), Positives = 19/24 (79%)
 Frame = +2

Query: 56  HMLRGNRNKKKSKNPRTRRKVRAT 127
           H ++GN  KK++K+ +TR+K R++
Sbjct: 192 HEVQGNVTKKRTKHSKTRQKARSS 215


>AL021497-8|CAA16409.1|  334|Caenorhabditis elegans Hypothetical
           protein Y51A2D.12 protein.
          Length = 334

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
 Frame = +2

Query: 8   FVQRHLLFL*CLNFVFHMLRG----NRNKKKSKNPRT 106
           F+   L+FL C N VF++L G    N  KK  K P T
Sbjct: 184 FLMPALIFLTCFNIVFNVLAGIRLYNMKKKGVKVPET 220


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,667,110
Number of Sequences: 27780
Number of extensions: 348862
Number of successful extensions: 958
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 921
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 958
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)