Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0016
         (715 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    22   4.3  
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    21   7.5  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    21   9.9  
AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    21   9.9  
AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory recept...    21   9.9  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    21   9.9  

>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = +3

Query: 54  PRIVRLGLIQHSIAISTDNPITQQRLAIFEK 146
           P IVR  L +H        P T Q+L   EK
Sbjct: 102 PPIVRCALRKHKPNRKPRTPFTTQQLLALEK 132


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 6/19 (31%), Positives = 12/19 (63%)
 Frame = +3

Query: 225 AFCTREKQPWCDFAEPVLT 281
           +F   + + WC  ++PVL+
Sbjct: 226 SFTLEQHRSWCSSSQPVLS 244


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = -3

Query: 119 SNWVISRDSNRMLYEA*SYNARFPAFFFSCR 27
           + ++I  +SNR  Y   + N  F     SCR
Sbjct: 360 TGFIICSESNRKFYFKRARNGTFSTTANSCR 390


>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = -3

Query: 278 QHRFCKVTPWLLFSCTKCKGHVPSFL 201
           + +FC V  ++   C    GH  +FL
Sbjct: 192 KQKFCVVNQYIKQVCKLNNGHYKNFL 217


>AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory receptor
           candidate 25 protein.
          Length = 314

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = -3

Query: 278 QHRFCKVTPWLLFSCTKCKGHVPSFL 201
           + +FC V  ++   C    GH  +FL
Sbjct: 17  KQKFCVVNQYIKQVCKLNNGHYKNFL 42


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 188 YSLFTRSLEHALCILYKRKATMV*LC 265
           + +FT  L   LCI Y   A ++ LC
Sbjct: 272 FIIFTMHLLFLLCIYYFYCALIILLC 297


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,065
Number of Sequences: 336
Number of extensions: 4065
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18947110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)