Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0016
(715 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0405 - 17767303-17767665,17767815-17768039,17768115-177683... 349 1e-96
02_04_0096 + 19669428-19669525,19670770-19670818,19671041-196711... 80 2e-15
06_01_0729 + 5367796-5368071,5368390-5368483,5368708-5368782,536... 61 1e-09
03_01_0535 + 4006284-4006418,4006483-4006599,4007363-4007587,400... 60 2e-09
02_05_0058 + 25478274-25478421,25478963-25479142,25479714-254800... 57 2e-08
02_05_0060 + 25484349-25484496,25485514-25485705,25486614-254869... 53 2e-07
12_02_0453 + 19192060-19192301,19192477-19192559,19193246-191933... 42 6e-04
10_03_0007 - 6956215-6956223,6957082-6957300,6957874-6957978,695... 29 2.8
10_08_0490 + 18279370-18279732,18280776-18280834,18281642-18282728 29 4.8
06_03_1137 + 27903012-27904196,27904330-27904542,27905775-279058... 28 6.4
06_03_1136 - 27897822-27898235,27898344-27898488,27899127-278992... 28 8.5
>07_03_0405 -
17767303-17767665,17767815-17768039,17768115-17768342,
17768607-17768621,17768622-17768810,17769106-17769213,
17769917-17770045
Length = 418
Score = 349 bits (858), Expect = 1e-96
Identities = 164/242 (67%), Positives = 192/242 (79%), Gaps = 5/242 (2%)
Frame = +3
Query: 3 FEIKAYDFPARKEECRKPRIVRLGLIQHSIAISTDNPITQQRLAIFEKVQKIISAAAAEQ 182
F+++A+ F A KE R+PR++R+GLIQ+SIAI T + Q+ AI EKV+ +I AA
Sbjct: 76 FDVQAFRFDADKEYLRQPRVIRVGLIQNSIAIPTTSHFADQKKAIMEKVKPMIDAAGDAG 135
Query: 183 VNILCLQ-----EAWNMPFAFCTREKQPWCDFAEPVLTGPSTVFLAELAVKYDMVIISPI 347
VNILCLQ EAW MPFAFCTREK+ WC+FAEPV G ST FL +LA KY+MVI+SPI
Sbjct: 136 VNILCLQVSQLSEAWTMPFAFCTREKR-WCEFAEPV-DGESTQFLQQLAKKYNMVIVSPI 193
Query: 348 LERDDIHGDTIWNTAVVINEFGKVIGKHRKNHIPRVGDFNESTYYFEGNTGHPVFETKYG 527
LERD HG+ +WNTAVVI G +IG HRKNHIPRVGDFNESTYY EGNTGHPVFET YG
Sbjct: 194 LERDVNHGEIVWNTAVVIGNHGNIIGIHRKNHIPRVGDFNESTYYMEGNTGHPVFETAYG 253
Query: 528 KVAINICYGRHHPLNWLMFGINGAEIVFNPSATVSGLSEHLWAVEARNAAIANSYYTCAI 707
K+ +NICYGRHHPLNWL FG+NGAEIVFNPSATV LSE +W +EARNAAIANSY+ +I
Sbjct: 254 KIGVNICYGRHHPLNWLAFGLNGAEIVFNPSATVGELSEPMWPIEARNAAIANSYFVGSI 313
Query: 708 NR 713
NR
Sbjct: 314 NR 315
>02_04_0096 +
19669428-19669525,19670770-19670818,19671041-19671132,
19671235-19671386,19671478-19671524,19671617-19671650,
19671769-19671935,19672070-19672166,19672239-19672408
Length = 301
Score = 79.8 bits (188), Expect = 2e-15
Identities = 46/162 (28%), Positives = 86/162 (53%), Gaps = 1/162 (0%)
Frame = +3
Query: 141 EKVQKIISAAAAEQVNILCLQEAWNMPFAFCTREKQPWCDFAEPVLTGPSTVFLAELAVK 320
+ +++I A + NI+ +QE + + FC ++ + A+P P+ + +LA +
Sbjct: 29 DTAERLIREAHKKGANIVLVQELFEGQY-FCQAQRLDFFQRAKPYKGNPTIIRFQKLAKE 87
Query: 321 YDMVI-ISPILERDDIHGDTIWNTAVVINEFGKVIGKHRKNHIPRVGDFNESTYYFEGNT 497
++VI +S E ++ H +N+ +I+ G +G +RK+HIP + E Y+ G+T
Sbjct: 88 LEVVIPVSFFEEANNAH----YNSVAIIDADGTDLGLYRKSHIPDGPGYQEKFYFNPGDT 143
Query: 498 GHPVFETKYGKVAINICYGRHHPLNWLMFGINGAEIVFNPSA 623
G F+TKY + + IC+ + P + GAEI+F P+A
Sbjct: 144 GFKAFKTKYATIGVGICWDQWFPECARAMVLQGAEILFYPTA 185
>06_01_0729 +
5367796-5368071,5368390-5368483,5368708-5368782,
5368919-5368997,5369155-5369170,5369260-5369346,
5369451-5369533,5369616-5369769
Length = 287
Score = 60.9 bits (141), Expect = 1e-09
Identities = 51/178 (28%), Positives = 83/178 (46%), Gaps = 10/178 (5%)
Frame = +3
Query: 201 QEAWNMPFAFCTREKQPWCDFAEPVLTG--PSTVFLAELAVKYDMVIIS-PILERDDIHG 371
QE WN P++ E P E + G PS L+E+A + + I+ I ER
Sbjct: 19 QEIWNCPYSM---ETLP--SHGEDIDGGASPSVSMLSEVAARRRITIVGGSIPERSS--- 70
Query: 372 DTIWNTAVVINEFGKVIGKHRKNHIPRV---GD--FNESTYYFEGNTGHPVFETKYGKVA 536
++NT VI G++ KHRK H+ + GD F ES + G + +T G++
Sbjct: 71 GRLFNTCCVIGPDGQIKAKHRKLHLFEIDIPGDITFRESDTFTAGQEP-TIVDTDVGRIG 129
Query: 537 INICYGRHHPLNWLMFGINGAEIVFNPSATVSGLSEHLWAVEARNAAIANSYY--TCA 704
I IC+ P +++ GA ++ PSA + LW + ++ A+ N + TC+
Sbjct: 130 IGICHDIRFPELAMLYRSRGAHLICYPSAFNMSTGQLLWDLMQKSRAVDNQLFVVTCS 187
>03_01_0535 +
4006284-4006418,4006483-4006599,4007363-4007587,
4008112-4008205,4008587-4008661,4009045-4009123,
4009385-4009400,4009441-4009584,4009822-4009904,
4010012-4010093
Length = 349
Score = 59.7 bits (138), Expect = 2e-09
Identities = 49/180 (27%), Positives = 81/180 (45%), Gaps = 10/180 (5%)
Frame = +3
Query: 114 ITQQRLAIFEKVQKIISAAAAEQVNILCLQEAWNMPFAFCTREKQPWCDFAEPVLTG--- 284
+T + + ++ I AAAA ++ L E WN P++ + ++AE + G
Sbjct: 55 VTADKARNIARAREAIEAAAAGGAKLVLLPEIWNGPYS-----NDSFPEYAEDIEAGGDA 109
Query: 285 -PSTVFLAELAVKYDMVIIS-PILERDDIHGDTIWNTAVVINEFGKVIGKHRKNH----- 443
PS ++E+A + ++ I ER G+ ++NT V G++ GKHRK H
Sbjct: 110 APSFSMMSEVARSLQITLVGGSISERS---GNKLYNTCCVFGSDGELKGKHRKIHLFDID 166
Query: 444 IPRVGDFNESTYYFEGNTGHPVFETKYGKVAINICYGRHHPLNWLMFGINGAEIVFNPSA 623
IP F ES G V +T G++ I ICY +++ GA ++ P A
Sbjct: 167 IPGKITFKESKTLTAGQ-DLTVVDTDVGRIGIGICYDIRFQELAMLYAARGAHLLCYPGA 225
>02_05_0058 +
25478274-25478421,25478963-25479142,25479714-25480007,
25480261-25480564,25480672-25480751,25480765-25480934
Length = 391
Score = 56.8 bits (131), Expect = 2e-08
Identities = 38/117 (32%), Positives = 58/117 (49%)
Frame = +3
Query: 282 GPSTVFLAELAVKYDMVIISPILERDDIHGDTIWNTAVVINEFGKVIGKHRKNHIPRVGD 461
GP LA LA KY + ++ ++ER G T++NT + + GK +GKHRK + G
Sbjct: 110 GPEVTRLAALAGKYKIFLVMGVVERV---GYTLYNTVLFFDPLGKYLGKHRK--VMPTGL 164
Query: 462 FNESTYYFEGNTGHPVFETKYGKVAINICYGRHHPLNWLMFGINGAEIVFNPSATVS 632
+ +G+T PV++T GK+ IC+ PL G +I P+A S
Sbjct: 165 ERVFWGFGDGST-IPVYDTPIGKIGAVICWENRMPLLRTAMYAKGVQIYCAPTADFS 220
>02_05_0060 +
25484349-25484496,25485514-25485705,25486614-25486907,
25487140-25487421,25487571-25487743
Length = 362
Score = 53.2 bits (122), Expect = 2e-07
Identities = 38/145 (26%), Positives = 68/145 (46%), Gaps = 1/145 (0%)
Frame = +3
Query: 282 GPSTVFLAELAVKYDMVIISPILERDDIHGDTIWNTAVVINEFGKVIGKHRKNHIPRVGD 461
GP LA +A KY + ++ ++ER+ G T++ + + + G+ +GKHRK +P
Sbjct: 114 GPEVTRLAAMAGKYKVFLVMGVIERE---GYTLYCSVLFFDPLGRYLGKHRKL-MPTA-- 167
Query: 462 FNESTYYFEGNTGHPVFETKYGKVAINICYGRHHP-LNWLMFGINGAEIVFNPSATVSGL 638
+ F + PV++T GK+ IC+ P L ++G G EI P+A
Sbjct: 168 LERIIWGFGDGSTIPVYDTPLGKIGALICWENKMPLLRTALYG-KGIEIYCAPTAD---- 222
Query: 639 SEHLWAVEARNAAIANSYYTCAINR 713
S +W + A+ + + N+
Sbjct: 223 SRQVWQASMTHIALEGGCFVLSANQ 247
>12_02_0453 +
19192060-19192301,19192477-19192559,19193246-19193328,
19193616-19193668,19194041-19194169,19194585-19194643,
19195317-19195429,19195571-19195663,19195810-19195912,
19196233-19196315,19196407-19196448
Length = 360
Score = 41.5 bits (93), Expect = 6e-04
Identities = 33/122 (27%), Positives = 57/122 (46%), Gaps = 6/122 (4%)
Frame = +3
Query: 357 DDIHGDTIWNTAVVINEFGKVIGKHRKNH-----IPRVGDFNESTYYFEGNTGHPVFETK 521
DD H +NT V+I++ G++ +RK H +P + ES + G+T V ++
Sbjct: 171 DDSHQ---YNTHVLIDDSGEIRSSYRKIHLFDVDVPGNMVYKESRFTTAGDTVVAV-DSP 226
Query: 522 YGKVAINICYGRHHP-LNWLMFGINGAEIVFNPSATVSGLSEHLWAVEARNAAIANSYYT 698
+G++ + +CY P L + + A+++ PSA E W + R AI Y
Sbjct: 227 FGRLGLTVCYDLRFPELYQCLRFKHQAQVLLVPSAFTKVTGEAHWEILLRARAIETQCYV 286
Query: 699 CA 704
A
Sbjct: 287 IA 288
>10_03_0007 -
6956215-6956223,6957082-6957300,6957874-6957978,
6958062-6958175,6958342-6958467,6958583-6958697,
6958791-6958867,6958956-6959179,6959848-6959953,
6960065-6960163,6960282-6960467,6960611-6960613
Length = 460
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +3
Query: 117 TQQRLAIFEKVQKIISAAAAEQVNILCLQEAW 212
+Q R F + +KII A+ +I+CLQE W
Sbjct: 68 SQYRAYWFSRNEKIIDRLLADCSSIICLQEVW 99
>10_08_0490 + 18279370-18279732,18280776-18280834,18281642-18282728
Length = 502
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Frame = +2
Query: 146 GSKDHICCSCRAS*YSLFTRSL--EHALCILYKRKATMV*LC 265
G + HICC C +L+ R + EHA C+ R + LC
Sbjct: 102 GERVHICCRCEFP-IALYGRLIPCEHAFCLACARSDSSCYLC 142
>06_03_1137 +
27903012-27904196,27904330-27904542,27905775-27905867,
27905940-27906008,27906412-27906612,27906688-27906834,
27907524-27907652,27909001-27909131,27909240-27909333
Length = 753
Score = 28.3 bits (60), Expect = 6.4
Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +3
Query: 102 TDNPITQQRL-AIFEKVQKIISAAAAEQVNILCLQE 206
T N RL A EK +K++SA A VNI CL E
Sbjct: 260 TGNVKASMRLRAACEKAKKVLSANAEAVVNIECLME 295
>06_03_1136 -
27897822-27898235,27898344-27898488,27899127-27899204,
27899302-27899400,27900508-27900613,27901323-27901428
Length = 315
Score = 27.9 bits (59), Expect = 8.5
Identities = 10/31 (32%), Positives = 21/31 (67%)
Frame = +3
Query: 570 NWLMFGINGAEIVFNPSATVSGLSEHLWAVE 662
+W + I+G+++ ATV+ +S +LWA++
Sbjct: 72 SWEILDISGSDVSDIGLATVANISNNLWAID 102
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,527,942
Number of Sequences: 37544
Number of extensions: 380697
Number of successful extensions: 820
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 810
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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