Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0016
(715 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_8782| Best HMM Match : CN_hydrolase (HMM E-Value=0) 57 2e-08
SB_11184| Best HMM Match : CN_hydrolase (HMM E-Value=4.4e-10) 47 1e-05
SB_19326| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 1e-04
SB_42548| Best HMM Match : DNA_binding_1 (HMM E-Value=5.2) 42 4e-04
SB_33972| Best HMM Match : CN_hydrolase (HMM E-Value=1.30321e-43) 33 0.30
SB_43326| Best HMM Match : TPR_2 (HMM E-Value=0.045) 29 3.7
SB_42331| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-07) 28 6.5
SB_35802| Best HMM Match : Laminin_EGF (HMM E-Value=0.25) 28 6.5
SB_31648| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_35673| Best HMM Match : Ribosomal_L32p (HMM E-Value=8.4) 28 6.5
SB_33401| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 28 6.5
SB_30086| Best HMM Match : LIM (HMM E-Value=0.5) 28 8.6
>SB_8782| Best HMM Match : CN_hydrolase (HMM E-Value=0)
Length = 242
Score = 56.8 bits (131), Expect = 2e-08
Identities = 49/174 (28%), Positives = 85/174 (48%), Gaps = 5/174 (2%)
Frame = +3
Query: 60 IVRLGLIQHSIAISTDNPITQQRLAIFEKVQKIISAAAAEQVNILCLQEAWNMPFAFCTR 239
+ R+GL+Q +A++ + QR EK+++ ++A A I+ L E +N P+
Sbjct: 5 VFRIGLVQ--LAVTANKLQNLQRAR--EKIKEAVAAGA----KIVALPECFNSPYG---- 52
Query: 240 EKQPWCDFAEPVLTGPSTVFLAELAVKYDMVIISPILERDDIHGDTIWNTAVVINEFGKV 419
Q + D+AE + G S+ LAE+A + I+ + + ++NT++ + G +
Sbjct: 53 -TQYFKDYAEEI-PGESSNMLAEVAKETGAYIVGGSIP-ERASNRKLYNTSLSYDPSGNL 109
Query: 420 IGKHRKNH-----IPRVGDFNESTYYFEGNTGHPVFETKYGKVAINICYGRHHP 566
+GKHRK H +P F ES G + +T+Y K+ I ICY P
Sbjct: 110 MGKHRKIHLFDIDVPGKIRFQESEVLSPGE-NLTILDTEYCKIGIGICYDMRFP 162
>SB_11184| Best HMM Match : CN_hydrolase (HMM E-Value=4.4e-10)
Length = 128
Score = 47.2 bits (107), Expect = 1e-05
Identities = 37/126 (29%), Positives = 60/126 (47%), Gaps = 5/126 (3%)
Frame = +3
Query: 204 EAWNMPFAFCTREKQPWCDFAEPVLTGPSTVFLAELAVKYDMVIISPILERDDIHGDTIW 383
E +N P+ Q + D+AE + G S+ LAE+A + I+ + +G ++
Sbjct: 1 ECFNSPYG-----TQYFKDYAEEI-PGESSNMLAEVAKETGAYIVGGSIPERASNGK-LY 53
Query: 384 NTAVVINEFGKVIGKHRKNH-----IPRVGDFNESTYYFEGNTGHPVFETKYGKVAINIC 548
NT++ + G ++GKHRK H +P F ES G + +T+Y K+ I IC
Sbjct: 54 NTSLSYDPSGNLMGKHRKIHLFDIDVPGKIRFQESEVLSPGE-NLTILDTEYCKIGIGIC 112
Query: 549 YGRHHP 566
Y P
Sbjct: 113 YDMRFP 118
>SB_19326| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 117
Score = 44.0 bits (99), Expect = 1e-04
Identities = 36/126 (28%), Positives = 67/126 (53%)
Frame = +3
Query: 60 IVRLGLIQHSIAISTDNPITQQRLAIFEKVQKIISAAAAEQVNILCLQEAWNMPFAFCTR 239
+ R+GL+Q +A++ + QR EK+++ ++A A I+ L E +N P+
Sbjct: 7 VFRIGLVQ--LAVTANKLQNLQRAR--EKIKEAVAAGA----KIVALPECFNSPYG---- 54
Query: 240 EKQPWCDFAEPVLTGPSTVFLAELAVKYDMVIISPILERDDIHGDTIWNTAVVINEFGKV 419
Q + D+AE + G S+ LAE+A + I+ + +G ++NT++ + G +
Sbjct: 55 -TQYFKDYAEEI-PGESSNMLAEVAKETGAYIVGGSIPERASNGK-LYNTSLSYDPSGNL 111
Query: 420 IGKHRK 437
+GKHRK
Sbjct: 112 MGKHRK 117
>SB_42548| Best HMM Match : DNA_binding_1 (HMM E-Value=5.2)
Length = 101
Score = 42.3 bits (95), Expect = 4e-04
Identities = 19/43 (44%), Positives = 27/43 (62%)
Frame = +3
Query: 3 FEIKAYDFPARKEECRKPRIVRLGLIQHSIAISTDNPITQQRL 131
FE+ Y A EE R+PR+VR+G +Q+ I T+ PI +Q L
Sbjct: 51 FELAGYKIDAAAEELRQPRLVRIGAVQNKIVEPTNMPIAKQVL 93
>SB_33972| Best HMM Match : CN_hydrolase (HMM E-Value=1.30321e-43)
Length = 294
Score = 32.7 bits (71), Expect = 0.30
Identities = 46/195 (23%), Positives = 79/195 (40%), Gaps = 4/195 (2%)
Frame = +3
Query: 132 AIFEKVQKIISAAAAEQVNILCLQEAWNMPFAFCTREKQPWCDFAEPVLTGPSTVFLAEL 311
A F + Q++I + + ++ L E F F ++K+ + AE L GP + +L
Sbjct: 22 ANFRQCQELIRKGSRKGAEVVFLPEG----FDFLMKDKEKILELAEH-LDGPRISKMCKL 76
Query: 312 AVKYDMVI-ISPILERDDIHGDTIWNTAVVINEFGKVIGKHRKNHIPRVGDFNESTYYFE 488
A + + + + + + N VVI+ G++ + K H+ D N E
Sbjct: 77 AEENGVWLSLGGFHCKHPSETRRVLNCHVVIDNKGRIAASYNKTHL---FDVN-----IE 128
Query: 489 GNTGHPVFETKY---GKVAINICYGRHHPLNWLMFGINGAEIVFNPSATVSGLSEHLWAV 659
G G + E+ + G + CY P ++ GA+I+ PSA W V
Sbjct: 129 G--GPCLKESAFIAHGDRIVPPCYDLRFPEFSMILARQGADILSFPSAFTFHTGSAHWEV 186
Query: 660 EARNAAIANSYYTCA 704
R+ AI Y A
Sbjct: 187 LLRSRAIETQCYVVA 201
>SB_43326| Best HMM Match : TPR_2 (HMM E-Value=0.045)
Length = 261
Score = 29.1 bits (62), Expect = 3.7
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = -3
Query: 533 NFTIFCFKYWMTSITFKIICRFIEISNPWNVVFTVFSYYLSKFIDNY 393
N+ +F ++ +FK+ R + + W VF +++ YLSKFI Y
Sbjct: 216 NYAMFLEEHRYFEESFKVYERGVAMFK-WPNVFDIWNTYLSKFIKRY 261
>SB_42331| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-07)
Length = 403
Score = 28.3 bits (60), Expect = 6.5
Identities = 18/74 (24%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Frame = +1
Query: 436 KTTFQGLEISMNLHIILKVILVIQYLK--QNMVKLPSIFAMVVTIH*TG*CLVSMVLKLY 609
K T+ E + L+I + +L++ + Q VK+P +F + V I C+++M + L
Sbjct: 120 KPTWLKTEPYLKLYIENEAVLIVGLIDILQGYVKVPDVFLLSVAISDCLACVIAMPVTLL 179
Query: 610 LTHQQQFQV*VNIC 651
+Q +C
Sbjct: 180 AVSNGSWQFDFELC 193
>SB_35802| Best HMM Match : Laminin_EGF (HMM E-Value=0.25)
Length = 781
Score = 28.3 bits (60), Expect = 6.5
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Frame = +3
Query: 267 EPVLTGPSTVFLAELAVKYDMVIISPILER--DDIH--GDTIWNTAVVINE 407
+ V +G S F ELAVKY VI SP+ D++H D W ++ + E
Sbjct: 354 QAVKSGGSNTF-GELAVKYFSVITSPMNAACCDEVHLVFDQYWEMSIKVEE 403
>SB_31648| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 656
Score = 28.3 bits (60), Expect = 6.5
Identities = 12/32 (37%), Positives = 22/32 (68%)
Frame = +1
Query: 448 QGLEISMNLHIILKVILVIQYLKQNMVKLPSI 543
+GL +S + HI+ + L++++LKQN LP +
Sbjct: 14 KGLSVSGHHHIVNRGRLMLEWLKQNEKSLPLV 45
>SB_35673| Best HMM Match : Ribosomal_L32p (HMM E-Value=8.4)
Length = 207
Score = 28.3 bits (60), Expect = 6.5
Identities = 19/78 (24%), Positives = 34/78 (43%)
Frame = -1
Query: 316 TASSAKKTVLGPVNTGSAKSHHGCFSLVQNAKGMFQASCKQRILTCSAAAADMIF*TFSN 137
T S K+T+ G NT K + + QN+ + +C + + + IF FS
Sbjct: 83 TRSKPKRTICGLFNTPKNKKTNTTLTRAQNSSNLAIGTCTRTSQYTRESKPNKIFNDFSQ 142
Query: 136 IASRC*VIGLSVEIAIEC 83
S+ G++++I C
Sbjct: 143 -TSKPKEAGIAMDIDYNC 159
>SB_33401| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 4277
Score = 28.3 bits (60), Expect = 6.5
Identities = 14/51 (27%), Positives = 22/51 (43%)
Frame = +3
Query: 423 GKHRKNHIPRVGDFNESTYYFEGNTGHPVFETKYGKVAINICYGRHHPLNW 575
G++R R + N+ F GN +Y + AI R HP++W
Sbjct: 3035 GRYRGAWSARHNNRNQYLQVFRGNNNRNTVRRQYLRPAIRAVSVRFHPVSW 3085
>SB_30086| Best HMM Match : LIM (HMM E-Value=0.5)
Length = 715
Score = 27.9 bits (59), Expect = 8.6
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Frame = -1
Query: 313 ASSAKK-TVLGPVNTGSAKSHHGCFSL--VQNAKGMFQASCKQRILTCS 176
A + KK TV G + G KSH CFS+ + +++G ++ + + L+C+
Sbjct: 662 ADAEKKCTVCGTLFQGYPKSHPQCFSIDRLDDSQGHYKWNVRLTCLSCN 710
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,910,035
Number of Sequences: 59808
Number of extensions: 459778
Number of successful extensions: 986
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 983
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1889780269
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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