Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0016
         (715 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ219482-1|ABB29886.1|  545|Anopheles gambiae cryptochrome 1 pro...    27   0.44 
AJ237664-1|CAB40379.2|   81|Anopheles gambiae putative infection...    24   5.4  

>DQ219482-1|ABB29886.1|  545|Anopheles gambiae cryptochrome 1
           protein.
          Length = 545

 Score = 27.5 bits (58), Expect = 0.44
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -1

Query: 322 YFTASSAKKTVLGPVNTGSAKSHHGCFSL 236
           Y+  + AK  +LGP  + SA    GC S+
Sbjct: 249 YYLPTQAKPEILGPATSMSAALRFGCLSV 277


>AJ237664-1|CAB40379.2|   81|Anopheles gambiae putative infection
           responsive shortpeptide protein.
          Length = 81

 Score = 23.8 bits (49), Expect = 5.4
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -1

Query: 190 ILTCSAAAADMIF*TFSNIASRC*VIG 110
           +L C+AA AD +   ++   +RC  IG
Sbjct: 10  VLLCTAAVADAMVFAYAPTCARCKSIG 36


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 756,593
Number of Sequences: 2352
Number of extensions: 15187
Number of successful extensions: 16
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 73177125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)