Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0016
(715 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U23139-15|AAK31488.1| 387|Caenorhabditis elegans Hypothetical p... 331 3e-91
AL132860-11|CAB60517.1| 440|Caenorhabditis elegans Hypothetical... 44 1e-04
AF069986-1|AAC39136.1| 440|Caenorhabditis elegans nitrilase and... 44 1e-04
Z35604-6|CAA84681.1| 305|Caenorhabditis elegans Hypothetical pr... 33 0.27
Z81079-3|CAB03083.2| 588|Caenorhabditis elegans Hypothetical pr... 29 4.4
AL161712-13|CAC70137.1| 830|Caenorhabditis elegans Hypothetical... 28 5.8
>U23139-15|AAK31488.1| 387|Caenorhabditis elegans Hypothetical
protein F13H8.7 protein.
Length = 387
Score = 331 bits (814), Expect = 3e-91
Identities = 149/237 (62%), Positives = 184/237 (77%)
Frame = +3
Query: 3 FEIKAYDFPARKEECRKPRIVRLGLIQHSIAISTDNPITQQRLAIFEKVQKIISAAAAEQ 182
F++ Y A+KE+ R PR+VR+ IQ+ I T + + +QR AI ++V +I AAA+
Sbjct: 54 FQLSGYIVDAQKEQTRAPRLVRVAAIQNKIHRPTTDSVVEQRDAIHQRVGAMIEAAASAG 113
Query: 183 VNILCLQEAWNMPFAFCTREKQPWCDFAEPVLTGPSTVFLAELAVKYDMVIISPILERDD 362
N++ LQEAW MPFAFCTRE+ PW +FAE V TGP+T FL++LAVK+D+VIISPILERD+
Sbjct: 114 ANVIGLQEAWTMPFAFCTRERLPWTEFAESVYTGPTTQFLSKLAVKHDIVIISPILERDE 173
Query: 363 IHGDTIWNTAVVINEFGKVIGKHRKNHIPRVGDFNESTYYFEGNTGHPVFETKYGKVAIN 542
D IWNTAVVI+ G+VIG+ RKNHIPRVGDFNESTYY E GHPVFETKYG++ IN
Sbjct: 174 EKDDVIWNTAVVISHTGRVIGRSRKNHIPRVGDFNESTYYMESTLGHPVFETKYGRIGIN 233
Query: 543 ICYGRHHPLNWLMFGINGAEIVFNPSATVSGLSEHLWAVEARNAAIANSYYTCAINR 713
ICYGRHHP NW+M+ +NGAEI+FNPSATV LSE LW +EARNAAIAN +T INR
Sbjct: 234 ICYGRHHPQNWMMYALNGAEIIFNPSATVGALSEPLWGIEARNAAIANHVFTVGINR 290
>AL132860-11|CAB60517.1| 440|Caenorhabditis elegans Hypothetical
protein Y56A3A.13 protein.
Length = 440
Score = 43.6 bits (98), Expect = 1e-04
Identities = 37/139 (26%), Positives = 58/139 (41%), Gaps = 6/139 (4%)
Frame = +3
Query: 306 ELAVKYDMVI-ISPILERDDIHGDTIWNTAVVINEFGKVIGKHRKNH-----IPRVGDFN 467
ELA K+++ + + + +D WNT ++I+ G ++ K H IP
Sbjct: 83 ELARKHNIWLSLGGLHHKDPSDAAHPWNTHLIIDSDGVTRAEYNKLHLFDLEIPGKVRLM 142
Query: 468 ESTYYFEGNTGHPVFETKYGKVAINICYGRHHPLNWLMFGINGAEIVFNPSATVSGLSEH 647
ES + G P +T G++ ++ICY P L GA+++ PSA
Sbjct: 143 ESEFSKAGTEMIPPVDTPIGRLGLSICYDVRFPELSLWNRKRGAQLLSFPSAFTLNTGLA 202
Query: 648 LWAVEARNAAIANSYYTCA 704
W R AI N Y A
Sbjct: 203 HWETLLRARAIENQCYVVA 221
>AF069986-1|AAC39136.1| 440|Caenorhabditis elegans nitrilase and
fragile histidinetriad fusion protein NitFhit protein.
Length = 440
Score = 43.6 bits (98), Expect = 1e-04
Identities = 37/139 (26%), Positives = 58/139 (41%), Gaps = 6/139 (4%)
Frame = +3
Query: 306 ELAVKYDMVI-ISPILERDDIHGDTIWNTAVVINEFGKVIGKHRKNH-----IPRVGDFN 467
ELA K+++ + + + +D WNT ++I+ G ++ K H IP
Sbjct: 83 ELARKHNIWLSLGGLHHKDPSDAAHPWNTHLIIDSDGVTRAEYNKLHLFDLEIPGKVRLM 142
Query: 468 ESTYYFEGNTGHPVFETKYGKVAINICYGRHHPLNWLMFGINGAEIVFNPSATVSGLSEH 647
ES + G P +T G++ ++ICY P L GA+++ PSA
Sbjct: 143 ESEFSKAGTEMIPPVDTPIGRLGLSICYDVRFPELSLWNRKRGAQLLSFPSAFTLNTGLA 202
Query: 648 LWAVEARNAAIANSYYTCA 704
W R AI N Y A
Sbjct: 203 HWETLLRARAIENQCYVVA 221
>Z35604-6|CAA84681.1| 305|Caenorhabditis elegans Hypothetical
protein ZK1058.6 protein.
Length = 305
Score = 32.7 bits (71), Expect = 0.27
Identities = 41/160 (25%), Positives = 70/160 (43%), Gaps = 14/160 (8%)
Frame = +3
Query: 132 AIFEKVQKIISAAAAEQVNILCLQEA-------WN-MPFAFCTREKQPWCDFA---EPVL 278
A EKV+K + AA ++ EA WN TR + +F E +
Sbjct: 18 ATLEKVKKNVEEAAGNGAELVLFPEAFIGGYPKWNSFGITMGTRTPEGRKEFKRYFENAI 77
Query: 279 --TGPSTVFLAELAVKYDMVIISPILERDDIHGDTIWNTAVVINEFGKVIGKHRKNHIPR 452
G + + LA + ++ I+ ++ER+ T++ + + G +GKHRK +P
Sbjct: 78 EENGEESKLIESLAAQNNIHIVIGVVERE---ASTLYCSVFFYSPSG-YLGKHRKL-LPT 132
Query: 453 VGDFNESTYYFEGN-TGHPVFETKYGKVAINICYGRHHPL 569
E + +G+ + PVF T GK+ IC+ + PL
Sbjct: 133 A---LERCVWGQGDGSTMPVFSTSVGKIGSAICWENYMPL 169
>Z81079-3|CAB03083.2| 588|Caenorhabditis elegans Hypothetical
protein F39H11.3 protein.
Length = 588
Score = 28.7 bits (61), Expect = 4.4
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = -2
Query: 525 HILFQILDDQYYLQNNM*IH*NLQP 451
+ILFQIL +YL +N +H +L+P
Sbjct: 137 NILFQILSGMHYLHSNWVLHRDLKP 161
>AL161712-13|CAC70137.1| 830|Caenorhabditis elegans Hypothetical
protein Y66D12A.17 protein.
Length = 830
Score = 28.3 bits (60), Expect = 5.8
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +3
Query: 27 PARKEECRKPRIVRL-GLIQHSIAISTDNPITQQRLAIFEKVQKIISA 167
P +K + R RIV L L H++ T P+T ++AIF+ ++ + A
Sbjct: 2 PPKKAQTR--RIVSLDSLFGHTLLNITGEPVTPTKIAIFQLIRTLFHA 47
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,636,081
Number of Sequences: 27780
Number of extensions: 364030
Number of successful extensions: 849
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 820
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 849
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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