Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0015
         (461 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    27   1.4  
SPAC328.08c |||tubulin specific chaperone cofactor C |Schizosacc...    27   1.8  
SPAC23D3.12 |||inorganic phosphate transporter |Schizosaccharomy...    26   2.4  
SPBC1105.04c |cbp1|abp1|CENP-B homolog|Schizosaccharomyces pombe...    25   5.6  

>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1427

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -3

Query: 387 TAQTAFEDISFTGLMRQRIVWCSLKTSQDFQ 295
           T  TAF  IS  GL+R + +W +  + Q  Q
Sbjct: 519 TPATAFTSISMFGLLRYQFIWLASVSRQFIQ 549


>SPAC328.08c |||tubulin specific chaperone cofactor C
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 259

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 16/40 (40%), Positives = 19/40 (47%)
 Frame = +2

Query: 314 LREHQTIRCLISPVKEISSNAV*AVSGDRPXFDFTTXMSD 433
           LR H  +RC  SPV E S     +   + P  DFT   SD
Sbjct: 208 LRVH--LRCKTSPVIEESKEISFSYKDEHPILDFTWARSD 245


>SPAC23D3.12 |||inorganic phosphate transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 559

 Score = 26.2 bits (55), Expect = 2.4
 Identities = 12/46 (26%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = -3

Query: 276 YFVRKVVFSYNYHKIYLNNNEE-KSRNKNIIANKTFKKTQLTEKHP 142
           Y   K +  Y  +  Y+ +++E K  N+N++  K    T  ++ HP
Sbjct: 256 YEQSKALNKYTDNDTYIADDDEPKKDNQNVVEEKQINLTTSSDSHP 301


>SPBC1105.04c |cbp1|abp1|CENP-B homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -2

Query: 418 GKVKLRSIARHRSNCI*RYFF 356
           GK+K R+I  H    +  YFF
Sbjct: 2   GKIKRRAITEHEKRALRHYFF 22


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,527,513
Number of Sequences: 5004
Number of extensions: 23562
Number of successful extensions: 58
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)