Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0015
         (461 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0020 - 16504322-16504654,16504758-16504785,16504937-165049...    31   0.60 
07_03_1537 + 27562097-27562340,27562436-27562494,27562605-275626...    27   5.6  
07_03_1258 + 25244863-25245282,25246419-25246568,25246665-252468...    27   5.6  
10_06_0143 - 11183574-11183761,11183989-11184344,11184437-111845...    27   9.7  

>03_04_0020 -
           16504322-16504654,16504758-16504785,16504937-16504989,
           16505377-16505463,16505636-16505704,16506071-16506145,
           16507040-16507210,16507693-16507793,16508062-16508139,
           16508492-16508648,16508737-16509006,16509369-16509485,
           16510250-16510339,16510417-16510629,16510742-16510891,
           16511929-16512342
          Length = 801

 Score = 30.7 bits (66), Expect = 0.60
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +3

Query: 42  CAVSTCAVLQTLCAVYYVYLCIIFMCILC 128
           C ++TC+ +   CA+  V LC    C+ C
Sbjct: 761 CFINTCSKMNDRCAIVMVQLCGALSCLAC 789


>07_03_1537 +
          27562097-27562340,27562436-27562494,27562605-27562680,
          27562776-27562847,27562934-27563021,27563118-27563361,
          27563490-27563605,27563783-27564000,27564113-27564144,
          27564262-27564364,27564471-27564751
          Length = 510

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = +1

Query: 1  AAARLLLIVLAHRPVQYPPVQCY 69
          AA RL L   AH  +  PP QCY
Sbjct: 6  AALRLALAAAAHLLLTLPPAQCY 28


>07_03_1258 +
           25244863-25245282,25246419-25246568,25246665-25246877,
           25246979-25247068,25247311-25247424,25247881-25248150,
           25248251-25248407,25248691-25248741,25248742-25248819,
           25249357-25249457,25249832-25250002,25250136-25250210,
           25251527-25251793
          Length = 718

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 8/29 (27%), Positives = 13/29 (44%)
 Frame = +3

Query: 42  CAVSTCAVLQTLCAVYYVYLCIIFMCILC 128
           C +  C  +   CA+    +C  F C+ C
Sbjct: 677 CCIKACNKMNDQCAIVMTQVCAAFACLGC 705


>10_06_0143 -
           11183574-11183761,11183989-11184344,11184437-11184592,
           11184825-11184994,11185906-11186064,11186856-11187164,
           11187281-11187576,11187825-11188174,11188279-11188434,
           11188634-11188803,11189289-11189447,11190702-11191010,
           11191172-11191458,11191911-11192263,11192366-11192521,
           11192680-11192849,11195800-11195958,11196937-11197254,
           11197658-11197786
          Length = 1449

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = +2

Query: 299 KSCEVLREHQTIRCLISPVKEISSNAV*AV 388
           K+ EVLREH +   L +  K ISSN + AV
Sbjct: 196 KATEVLREHWSTYILENDFKFISSNGLNAV 225


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,260,532
Number of Sequences: 37544
Number of extensions: 130703
Number of successful extensions: 299
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 297
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 299
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 919380308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)