Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0015
         (461 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39650-5|AAK39185.2|  632|Caenorhabditis elegans Hypothetical pr...    29   1.6  
Z78200-6|CAB01585.2|  524|Caenorhabditis elegans Hypothetical pr...    28   3.7  
Z72515-5|CAH60771.2|  331|Caenorhabditis elegans Hypothetical pr...    27   6.5  

>U39650-5|AAK39185.2|  632|Caenorhabditis elegans Hypothetical
           protein C25A11.2 protein.
          Length = 632

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = -2

Query: 448 VSFMHITHXSGKVKLRSIARHRSNCI*RYFFHRAYEATYSL 326
           ++ +H TH S   KL   A H  + I     H  Y +TY L
Sbjct: 552 IAILHSTHISDSAKLELAAEHHFDIIKYVARHPRYASTYHL 592


>Z78200-6|CAB01585.2|  524|Caenorhabditis elegans Hypothetical
           protein T04H1.8 protein.
          Length = 524

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = -2

Query: 343 EATYSLVFP*NFTRFP 296
           EATYS  FP NF++FP
Sbjct: 462 EATYSTEFPPNFSKFP 477


>Z72515-5|CAH60771.2|  331|Caenorhabditis elegans Hypothetical
           protein T11A5.7 protein.
          Length = 331

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -1

Query: 128 TQNTHKNYTQIHIIHST*CL*HCTG 54
           TQN HKN   I  +H T  L HC+G
Sbjct: 48  TQNFHKNLRIIAQMHLTGFLLHCSG 72


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,572,733
Number of Sequences: 27780
Number of extensions: 135774
Number of successful extensions: 359
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 359
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 818426686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)