Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0015
         (461 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    21   4.9  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    21   4.9  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   4.9  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   4.9  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    21   6.5  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    21   6.5  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    21   8.5  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    21   8.5  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   8.5  

>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -3

Query: 246 NYHKIYLNNNEEKSRNKNII 187
           NY K+Y NN ++   N N I
Sbjct: 95  NYKKLYCNNYKKLYYNINYI 114


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -3

Query: 246 NYHKIYLNNNEEKSRNKNII 187
           NY K+Y NN ++   N N I
Sbjct: 95  NYKKLYCNNYKKLYYNINYI 114


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = -1

Query: 317 LKLHKISSYGNHIF 276
           LKLH+++ YG  ++
Sbjct: 247 LKLHQVAHYGEKVY 260


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = -3

Query: 240 HKIYLNNNEEKSRNKNIIANKTFKKTQLTEKHP 142
           HK      ++   NK+I       ++QL ++HP
Sbjct: 114 HKFISKKIKKTMENKDITKRPLPNESQLIKRHP 146


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -3

Query: 246 NYHKIYLNNNEEKSRNKNII 187
           NY K+Y NN  +   N N I
Sbjct: 95  NYKKLYCNNYRKLYYNINYI 114


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = -3

Query: 252 SYNYHKIYLNNNEEKSRNKNI 190
           S NY   Y NNN  K    NI
Sbjct: 310 SCNYSNNYYNNNNYKKLYYNI 330


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 20.6 bits (41), Expect = 8.5
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = -2

Query: 349 AYEATYSLVF 320
           AYE T+SLVF
Sbjct: 224 AYEETFSLVF 233


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 20.6 bits (41), Expect = 8.5
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = -3

Query: 264 KVVFSYNYHKIYLNNNEEKSRNKNIIANKTF 172
           K++ S +   I+ NNN + + N N   N  +
Sbjct: 313 KIISSLSNKTIHNNNNYKYNYNNNNYNNNNY 343


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 20.6 bits (41), Expect = 8.5
 Identities = 7/27 (25%), Positives = 16/27 (59%)
 Frame = -3

Query: 222 NNEEKSRNKNIIANKTFKKTQLTEKHP 142
           N  ++S + ++  N+T+   Q+  K+P
Sbjct: 566 NTTDQSMDIDVCDNQTYTSLQMAMKNP 592


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,065
Number of Sequences: 438
Number of extensions: 2031
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12312900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)