Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0015
         (461 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g08740.1 68418.m01038 pyridine nucleotide-disulphide oxidored...    27   6.2  
At4g17565.1 68417.m02626 F-box family protein contains F-box dom...    27   6.2  

>At5g08740.1 68418.m01038 pyridine nucleotide-disulphide
           oxidoreductase family protein similar to DhnA
           [Synechococcus sp. PCC 7942] GI:15620546; contains Pfam
           profile PF00070: Pyridine nucleotide-disulphide
           oxidoreductase
          Length = 519

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -3

Query: 411 SNXGLSPDTAQTAFEDISFTG 349
           SN  + P TAQ AF++  FTG
Sbjct: 403 SNGKILPTTAQVAFQEADFTG 423


>At4g17565.1 68417.m02626 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 378

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -3

Query: 399 LSPDTAQTAFEDISFTGLMRQRIV 328
           L PD  ++ FE +SFT L R ++V
Sbjct: 21  LCPDLLRSIFEQLSFTNLNRAKLV 44


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,735,358
Number of Sequences: 28952
Number of extensions: 114316
Number of successful extensions: 302
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 298
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 302
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 772134480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)