Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0012
         (442 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces pomb...    26   3.0  
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch...    25   5.2  
SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine N-methy...    24   9.0  
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch...    24   9.0  

>SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 955

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -1

Query: 265 FNRAPNDFQCEGSGSTVLLIADILEHQ*PLIIGWAVCSSAIAV 137
           F++ P +   E   S + L     +   PL++  AVC +AIA+
Sbjct: 69  FHQLPKETHIEFRNSLLQLFLAAKDSPRPLLVSLAVCMAAIAL 111


>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 845

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -2

Query: 336 EKSSGFGTKSLPLPCFPSAMRGPFLIELRMTS 241
           EKSS F    LP+P   + +  P  I ++ T+
Sbjct: 621 EKSSNFSCLQLPIPVLNTPILTPVTINIQSTT 652


>SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine
           N-methytransferase Rmt3|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 543

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +3

Query: 231 PSHWKSFGARLKKDPS*RSGNTVEEETSF 317
           P+HWK     L+  P  + G  VE   SF
Sbjct: 485 PTHWKQCVLLLRNRPFLQKGTRVEGTISF 513


>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1316

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +3

Query: 111  VSSTDKLLRTAMADE 155
            V+  DK+LRT MADE
Sbjct: 1226 VTDEDKMLRTLMADE 1240


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,762,361
Number of Sequences: 5004
Number of extensions: 33070
Number of successful extensions: 81
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)