Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0012
         (442 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0204 - 21559024-21559287,21559445-21559567,21559665-215597...    28   3.8  
06_03_0635 - 22971502-22973840,22974112-22974403,22974639-229751...    27   8.8  

>09_06_0204 - 21559024-21559287,21559445-21559567,21559665-21559718,
            21559800-21560721,21560803-21561212,21561284-21561408,
            21561524-21561571,21561668-21561789,21562008-21562099,
            21562242-21562429,21562582-21562696,21562780-21562863,
            21562994-21563087,21563393-21563510,21563805-21563930,
            21564002-21564074,21564209-21564296,21564674-21564744,
            21564839-21564918,21565004-21565065,21565169-21565310,
            21565410-21565510,21565600-21565644,21565725-21565789,
            21566088-21566163,21566246-21566300,21566416-21566773
          Length = 1366

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 17/56 (30%), Positives = 26/56 (46%)
 Frame = +2

Query: 233  FTLEVIRSSIKKGPLIALGKHGRGRDFVPKPDDFSSKPLQVSKCHKSV*SANRALL 400
            F +    S   K  L  L +HG   D +P  D  +S PL++     +V S N+ +L
Sbjct: 1107 FLVSCSSSLSSKFYLTYLWRHGPSADILPGKDFLASPPLKIKVMVCNVSSVNKMML 1162


>06_03_0635 -
           22971502-22973840,22974112-22974403,22974639-22975162,
           22975314-22975583,22976393-22977124,22977226-22977310
          Length = 1413

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = -3

Query: 221 NCTLDC*YP*ASVTTHHRMGRMLVCHCSPQKLVGRRDSTSVQENQ-DRV 78
           NC +    P A   THH   + L C CS  +++ R D+    + + DRV
Sbjct: 255 NCCMHKLSPSARGNTHHIGSQFLRCTCSCGRVLQREDTMKTPKLKFDRV 303


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,823,135
Number of Sequences: 37544
Number of extensions: 231766
Number of successful extensions: 615
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 615
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 835800280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)