Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0012
         (442 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22837| Best HMM Match : REJ (HMM E-Value=0.057)                     29   1.3  
SB_18230| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_43858| Best HMM Match : TPR_2 (HMM E-Value=0.0013)                  29   2.2  
SB_55865| Best HMM Match : RRS1 (HMM E-Value=6.4e-07)                  28   3.0  
SB_10895| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.9  
SB_22296| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  

>SB_22837| Best HMM Match : REJ (HMM E-Value=0.057)
          Length = 643

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +3

Query: 87  LVLLDACTVSSTDKLLRTAMADEHTAH 167
           L +LDA  + S+D+ L T   DEH+AH
Sbjct: 406 LTVLDAKGLKSSDEALLTVKEDEHSAH 432


>SB_18230| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 164

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = +1

Query: 193 QGYQQSRVQLNRCLHTGSHSELD*KRTPHSARETR*R 303
           +GY+  ++Q+ +  H G   E+  K  P ++R+T+ R
Sbjct: 69  RGYRLDKLQVTKYTHKGGPGEISFKPLPRNSRDTKVR 105


>SB_43858| Best HMM Match : TPR_2 (HMM E-Value=0.0013)
          Length = 517

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
 Frame = +2

Query: 242 EVIRSSIKKGPLIALG----KHGRGRDFVPKPDDFSSKPLQVSKCH 367
           EV+++ I  GP + L     K   GRD+  +   +S  PLQV+K H
Sbjct: 383 EVVKNLIDFGPKVTLLRQKLKQHIGRDWTKEETVYSKNPLQVAKQH 428


>SB_55865| Best HMM Match : RRS1 (HMM E-Value=6.4e-07)
          Length = 424

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 212 EYS*TAAFTLEVIRSSIKKGPLIALGK 292
           EYS     TLEV+   +KKGP++ + K
Sbjct: 346 EYSSEKTKTLEVVEKMLKKGPVLDINK 372


>SB_10895| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 496

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -3

Query: 173 HRMGRMLVCHCSPQKLV 123
           HRMGR L CH + +KL+
Sbjct: 81  HRMGRGLSCHTTTKKLI 97


>SB_22296| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 681

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = +2

Query: 242 EVIRSSIKKGPLIALGKHGRGRDFVPKPDDFSSKPLQVSK 361
           +++++  K+G    + +  R  DFVP+P + S++   V K
Sbjct: 593 KILKALSKQGTSAVIDEMRRALDFVPRPKNTSARNASVRK 632


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,493,294
Number of Sequences: 59808
Number of extensions: 268736
Number of successful extensions: 582
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 582
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 859323430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)