Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0012
         (442 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z34799-2|CAA84318.1|  692|Caenorhabditis elegans Hypothetical pr...    28   2.6  
U41508-3|AAN39664.1|  317|Caenorhabditis elegans Set (trithorax/...    27   8.0  
U41508-2|AAN39665.2|  552|Caenorhabditis elegans Set (trithorax/...    27   8.0  

>Z34799-2|CAA84318.1|  692|Caenorhabditis elegans Hypothetical
           protein F34D10.4 protein.
          Length = 692

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
 Frame = -1

Query: 244 FQCEGSGSTVLLIADILEHQ*PLIIGWAVCSSAIAVLKSLSVD--ETVQASR 95
           F+CEG    V+   D++EH+ P     A+C   +  ++ L ++  +T+ A R
Sbjct: 55  FECEGCTKQVVDFMDLVEHRSPST--GAICRGTVENMRQLRLERMKTIDAHR 104


>U41508-3|AAN39664.1|  317|Caenorhabditis elegans Set
           (trithorax/polycomb) domaincontaining protein 20,
           isoform a protein.
          Length = 317

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
 Frame = -1

Query: 379 LYTFVTL*DLERFRGKIIRL-WNEVSSSTVFPE--RYEGSFFNRAPN 248
           LY FVTL DL+R   KI  + ++E   +T  P+  RY   F  ++ N
Sbjct: 267 LYPFVTLDDLQRMNRKIQDMHFDEFIKNTAAPQLHRYSTRFAVQSSN 313


>U41508-2|AAN39665.2|  552|Caenorhabditis elegans Set
           (trithorax/polycomb) domaincontaining protein 20,
           isoform b protein.
          Length = 552

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
 Frame = -1

Query: 379 LYTFVTL*DLERFRGKIIRL-WNEVSSSTVFPE--RYEGSFFNRAPN 248
           LY FVTL DL+R   KI  + ++E   +T  P+  RY   F  ++ N
Sbjct: 502 LYPFVTLDDLQRMNRKIQDMHFDEFIKNTAAPQLHRYSTRFAVQSSN 548


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,826,730
Number of Sequences: 27780
Number of extensions: 191077
Number of successful extensions: 572
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 572
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 756625558
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)