Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0011
         (418 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory recept...    23   0.90 
U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       21   6.4  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    21   6.4  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    21   6.4  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    20   8.4  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    20   8.4  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    20   8.4  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    20   8.4  
AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory recept...    20   8.4  

>AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory receptor
           candidate 41 protein.
          Length = 398

 Score = 23.4 bits (48), Expect = 0.90
 Identities = 10/52 (19%), Positives = 28/52 (53%)
 Frame = -2

Query: 402 KFRPHDKITEFSIGLW*VEALVNRLVIAILISFFAEGKRVRFQIVFVTLVQE 247
           +FR +   + F   +  +  L +  ++ I+ + F + KR+R  ++ ++ ++E
Sbjct: 66  QFRSYSNFSVFLFDIITIVTLTSTSILLIVNAVFVKEKRIRTLLIKLSEIKE 117


>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 20.6 bits (41), Expect = 6.4
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -1

Query: 187 CHLCCSKASALR*QQGPL 134
           C LC    S+ R  QGPL
Sbjct: 172 CDLCQKTKSSNRPHQGPL 189


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 20.6 bits (41), Expect = 6.4
 Identities = 5/8 (62%), Positives = 7/8 (87%)
 Frame = -1

Query: 193 WYCHLCCS 170
           + CH+CCS
Sbjct: 648 YICHVCCS 655


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 20.6 bits (41), Expect = 6.4
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +3

Query: 63  ILFYCPSTILT 95
           +LFYCP  I T
Sbjct: 83  LLFYCPFIIFT 93


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 20.2 bits (40), Expect = 8.4
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -2

Query: 264 VTLVQEERSVIIFCLIPIFW 205
           V L   ER   ++CLI  FW
Sbjct: 121 VKLPSAERVAWMWCLIFAFW 140


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 20.2 bits (40), Expect = 8.4
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -2

Query: 264 VTLVQEERSVIIFCLIPIFW 205
           V L   ER   ++CLI  FW
Sbjct: 121 VKLPSAERVAWMWCLIFAFW 140


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 20.2 bits (40), Expect = 8.4
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -2

Query: 264 VTLVQEERSVIIFCLIPIFW 205
           V L   ER   ++CLI  FW
Sbjct: 121 VKLPSAERVAWMWCLIFAFW 140


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 20.2 bits (40), Expect = 8.4
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -2

Query: 264 VTLVQEERSVIIFCLIPIFW 205
           V L   ER   ++CLI  FW
Sbjct: 121 VKLPSAERVAWMWCLIFAFW 140


>AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory receptor
           candidate 60 protein.
          Length = 364

 Score = 20.2 bits (40), Expect = 8.4
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +3

Query: 72  YCPSTILTDRDYVIIFPNRYYSGPCCQ 152
           YC + I   ++ VI+    YY    CQ
Sbjct: 247 YCTTLIGLIKNCVIVIFELYYLSHVCQ 273


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,970
Number of Sequences: 336
Number of extensions: 2036
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  9174063
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)