Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0011
(418 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po... 26 2.0
SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription te... 26 2.7
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph... 25 3.6
SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein At... 25 4.7
SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces ... 25 4.7
SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces p... 25 4.7
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 25 4.7
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 25 6.2
SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomy... 25 6.2
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth... 25 6.2
SPAC23H4.11c |cnl2||centromere localized protein Cnl2|Schizosacc... 24 8.2
SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase Ssp2|Schiz... 24 8.2
>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 26.2 bits (55), Expect = 2.0
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -1
Query: 70 NKMNKSLKMWCSGGTPDAF 14
NK N++L CS G PDAF
Sbjct: 362 NKSNRTLVTPCSPGDPDAF 380
>SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription
termination factor Reb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 504
Score = 25.8 bits (54), Expect = 2.7
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = +1
Query: 241 SLFLNKSDKNDLEPYPLALSEEGNQDGYDQTVDQRFDSPQSNGELG 378
SL ++ KND + +PL + N + Y +++ +F S E G
Sbjct: 20 SLQSSRKRKNDFDDFPLNKGLKTNNNDYSGSIEPKFSPALSIKEDG 65
>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
Phf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 538
Score = 25.4 bits (53), Expect = 3.6
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +1
Query: 268 NDLEPYPLALSEEGNQDGYDQTVDQRFDSPQSNGELGNL 384
NDL P + EE NQ+G +DQ F Q+ N+
Sbjct: 31 NDLHP-TMFEGEESNQNGGSVLIDQAFQDIQNPNVNSNM 68
>SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein Atg13
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 758
Score = 25.0 bits (52), Expect = 4.7
Identities = 21/79 (26%), Positives = 31/79 (39%), Gaps = 1/79 (1%)
Frame = +3
Query: 78 PSTILTDRDYVIIFPNRYYSGPCCQRSADAFEQQRWQYHQ*TARKLGSNKR**PISL-LE 254
PS T + + R P C RSA + R++YH ++ L + P SL
Sbjct: 622 PSANDTSKQLASLHDMRKSQSPICARSATSAGLPRFEYHTSLSKSLEHSST--PASLQAT 679
Query: 255 QE*QKRFGTLPACPQRRRK 311
+ F P PQ +K
Sbjct: 680 KTPSPSFVLEPGIPQEYKK 698
>SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 726
Score = 25.0 bits (52), Expect = 4.7
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = +1
Query: 211 NWDQTKDDNRSLFLNKSDKNDLE 279
NW + D SL +KNDLE
Sbjct: 546 NWQKETDKKNSLVNEAEEKNDLE 568
>SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 192
Score = 25.0 bits (52), Expect = 4.7
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +1
Query: 190 TISELPENWDQTKDDNRSLFLNKSDKNDLEPYPLALSEEGNQDGYDQ 330
T ++ P ++ T DN ++ + D EPY L L + Q+ YD+
Sbjct: 24 TTNKFPSDYVPTVFDNYAVTVMIGD----EPYTLGLFDTAGQEDYDR 66
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 25.0 bits (52), Expect = 4.7
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +1
Query: 157 VPTPSNNKDGSTISELPENWDQTK 228
V PSN+ D + ++E P N ++TK
Sbjct: 546 VTEPSNDADKAIVAEGPNNEEETK 569
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 24.6 bits (51), Expect = 6.2
Identities = 13/55 (23%), Positives = 27/55 (49%)
Frame = +1
Query: 199 ELPENWDQTKDDNRSLFLNKSDKNDLEPYPLALSEEGNQDGYDQTVDQRFDSPQS 363
+L E+ Q DD+ + + + ++ DL+ A ++ D++ +Q DS S
Sbjct: 4298 DLTESQSQAFDDSEFMHVKEDEEEDLQALGNAEKDQIKSIDRDESANQNPDSMNS 4352
>SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 459
Score = 24.6 bits (51), Expect = 6.2
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +3
Query: 276 GTLPACPQRRRKSRWL*PNG*PTLRLTTV 362
GT+P CP R + S + N P TT+
Sbjct: 345 GTIPECPSRNKTSWAVSANAFPVTPNTTI 373
>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1323
Score = 24.6 bits (51), Expect = 6.2
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = -1
Query: 241 IGYHLLFDPN 212
+GYHL FDPN
Sbjct: 1038 LGYHLTFDPN 1047
>SPAC23H4.11c |cnl2||centromere localized protein
Cnl2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 188
Score = 24.2 bits (50), Expect = 8.2
Identities = 14/49 (28%), Positives = 22/49 (44%)
Frame = +3
Query: 36 EHHILRDLFILFYCPSTILTDRDYVIIFPNRYYSGPCCQRSADAFEQQR 182
E IL D + +I++ + +FP RY P +R + QQR
Sbjct: 4 EEQILNDYLLSQGRLQSIISLEQWRQLFPQRYREDPLIERLYEYCTQQR 52
>SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase
Ssp2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 576
Score = 24.2 bits (50), Expect = 8.2
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +1
Query: 190 TISELPENWDQTKDDNRSLFLNKSDKNDLEPYPLA 294
T+S+ P QT D N + + ++KN LE LA
Sbjct: 397 TVSDPPTYAKQTIDSNICVLVPTAEKNKLEMRTLA 431
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,739,344
Number of Sequences: 5004
Number of extensions: 32906
Number of successful extensions: 124
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 146319408
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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