Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0011
(418 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000195-3|AAC24268.1| 689|Caenorhabditis elegans Hmg protein 3... 33 0.083
AC006673-3|AAF39929.1| 861|Caenorhabditis elegans Hypothetical ... 30 0.59
Z72514-2|CAA96675.2| 422|Caenorhabditis elegans Hypothetical pr... 29 1.4
U39849-9|AAA81051.1| 180|Caenorhabditis elegans Skp1 related (u... 29 1.4
AL023844-10|CAA19530.3| 503|Caenorhabditis elegans Hypothetical... 29 1.4
AL023844-9|CAH04760.1| 512|Caenorhabditis elegans Hypothetical ... 29 1.4
AF440517-1|AAL34105.1| 180|Caenorhabditis elegans SKR-17 protein. 29 1.4
Z69664-8|CAN86924.1| 1287|Caenorhabditis elegans Hypothetical pr... 29 1.8
Z69664-7|CAA93515.2| 1338|Caenorhabditis elegans Hypothetical pr... 29 1.8
Z66500-13|CAA91312.1| 1780|Caenorhabditis elegans Hypothetical p... 29 1.8
Z48334-10|CAA88315.1| 1780|Caenorhabditis elegans Hypothetical p... 29 1.8
AF043706-2|AAB97604.2| 730|Caenorhabditis elegans Hypothetical ... 28 3.1
AL032631-11|CAB63341.1| 975|Caenorhabditis elegans Hypothetical... 27 4.1
Z82052-1|CAB04823.1| 300|Caenorhabditis elegans Hypothetical pr... 27 5.5
U28928-6|AAA68338.1| 188|Caenorhabditis elegans Hypothetical pr... 27 5.5
Z93374-3|CAB07558.2| 363|Caenorhabditis elegans Hypothetical pr... 27 7.2
Z81575-4|CAB04630.1| 320|Caenorhabditis elegans Hypothetical pr... 27 7.2
Z73423-2|CAA97774.1| 290|Caenorhabditis elegans Hypothetical pr... 27 7.2
AF273815-1|AAG15164.1| 365|Caenorhabditis elegans nuclear recep... 27 7.2
Z82056-1|CAB04854.1| 325|Caenorhabditis elegans Hypothetical pr... 26 9.5
Z70308-1|CAA94351.1| 213|Caenorhabditis elegans Hypothetical pr... 26 9.5
AF098999-3|AAC68726.2| 445|Caenorhabditis elegans Hypothetical ... 26 9.5
>AF000195-3|AAC24268.1| 689|Caenorhabditis elegans Hmg protein 3
protein.
Length = 689
Score = 33.1 bits (72), Expect = 0.083
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
Frame = +1
Query: 142 LAVSAVPTPSNNK--DGSTISELPENWDQTKDDNRSLFLNKSDKNDLEPYPLALSEEGNQ 315
L SA+ NNK D E+ + + DN+S SD++D++PY + EG +
Sbjct: 403 LTFSAMDKEENNKLFDYLNKKEIKIR-NSHRIDNKSAGYGSSDEDDIDPYKSTVKAEGRE 461
Query: 316 ---DGYDQTVDQRFD 351
D D++ D+ +D
Sbjct: 462 QDDDSDDESTDEDYD 476
>AC006673-3|AAF39929.1| 861|Caenorhabditis elegans Hypothetical
protein K09D9.11 protein.
Length = 861
Score = 30.3 bits (65), Expect = 0.59
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +2
Query: 182 MAVPSVNCQKIGIKQKMITDLSS*TRVTKTIWNLTRLPSAKKEI 313
+ P V + IG+ K++ DL R K + N+T P K+I
Sbjct: 286 LQTPMVLSESIGLSAKVLEDLEKTRRNRKRLLNITEFPDEVKQI 329
>Z72514-2|CAA96675.2| 422|Caenorhabditis elegans Hypothetical
protein T10B10.2 protein.
Length = 422
Score = 29.1 bits (62), Expect = 1.4
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +1
Query: 286 PLALSEEGNQDGYDQTVDQRFDSPQSNGELGNLIMRP 396
P ++ G + YD VDQ + NG LGN I P
Sbjct: 140 PTMRADNGYRTAYDLVVDQIHKAAYRNGGLGNSIYAP 176
>U39849-9|AAA81051.1| 180|Caenorhabditis elegans Skp1 related
(ubiquitin ligasecomplex component) protein 17 protein.
Length = 180
Score = 29.1 bits (62), Expect = 1.4
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +1
Query: 160 PTPSNNKDGSTISELPENWDQTKDDNRSLFLNKSDKNDL 276
P P NN G T+ L E D+ K+D+ ++ L + DK ++
Sbjct: 67 PVPVNNVVGFTLKLLIEWCDKHKEDDPAIALAEKDKKNI 105
>AL023844-10|CAA19530.3| 503|Caenorhabditis elegans Hypothetical
protein Y48A6B.6a protein.
Length = 503
Score = 29.1 bits (62), Expect = 1.4
Identities = 10/35 (28%), Positives = 20/35 (57%)
Frame = +3
Query: 75 CPSTILTDRDYVIIFPNRYYSGPCCQRSADAFEQQ 179
CP I+ + +Y I P++Y + CC + D +++
Sbjct: 160 CPVDIIEELEYWRIIPDQYLASCCCAQQIDDDDEE 194
>AL023844-9|CAH04760.1| 512|Caenorhabditis elegans Hypothetical
protein Y48A6B.6b protein.
Length = 512
Score = 29.1 bits (62), Expect = 1.4
Identities = 10/35 (28%), Positives = 20/35 (57%)
Frame = +3
Query: 75 CPSTILTDRDYVIIFPNRYYSGPCCQRSADAFEQQ 179
CP I+ + +Y I P++Y + CC + D +++
Sbjct: 196 CPVDIIEELEYWRIIPDQYLASCCCAQQIDDDDEE 230
>AF440517-1|AAL34105.1| 180|Caenorhabditis elegans SKR-17 protein.
Length = 180
Score = 29.1 bits (62), Expect = 1.4
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +1
Query: 160 PTPSNNKDGSTISELPENWDQTKDDNRSLFLNKSDKNDL 276
P P NN G T+ L E D+ K+D+ ++ L + DK ++
Sbjct: 67 PVPVNNVVGFTLKLLIEWCDKHKEDDPAIALAEKDKKNI 105
>Z69664-8|CAN86924.1| 1287|Caenorhabditis elegans Hypothetical
protein K04D7.5b protein.
Length = 1287
Score = 28.7 bits (61), Expect = 1.8
Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Frame = +1
Query: 133 TAVLAVSAVPTPSNNKDGSTISELPENWDQTKDDNRSL-FLNKSDKNDLEPYPLALSEEG 309
T +V+ +PT N D + ++T+ DN +L L+ D D E Y + +
Sbjct: 237 TRAESVAPIPTLDNVDDDGFYRDFVTGINRTEKDNDNLEVLDTEDDPDDEDYNVCADDGL 296
Query: 310 NQDGYDQT 333
N + +D+T
Sbjct: 297 NVEDWDET 304
>Z69664-7|CAA93515.2| 1338|Caenorhabditis elegans Hypothetical
protein K04D7.5a protein.
Length = 1338
Score = 28.7 bits (61), Expect = 1.8
Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Frame = +1
Query: 133 TAVLAVSAVPTPSNNKDGSTISELPENWDQTKDDNRSL-FLNKSDKNDLEPYPLALSEEG 309
T +V+ +PT N D + ++T+ DN +L L+ D D E Y + +
Sbjct: 237 TRAESVAPIPTLDNVDDDGFYRDFVTGINRTEKDNDNLEVLDTEDDPDDEDYNVCADDGL 296
Query: 310 NQDGYDQT 333
N + +D+T
Sbjct: 297 NVEDWDET 304
>Z66500-13|CAA91312.1| 1780|Caenorhabditis elegans Hypothetical
protein F10B5.7 protein.
Length = 1780
Score = 28.7 bits (61), Expect = 1.8
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = +1
Query: 166 PSNNKDGSTISE-LP-ENWDQTKDDNRSLFLNKSDKNDLEPYPLALSEEGNQDGYDQTVD 339
P NK G I + LP WD D R L L+K+D YP+A E + + +++
Sbjct: 1435 PKINKAGRCIGQSLPWVAWDALCDLRRQLMLDKNDAVLRGKYPIAARLE---EEIENSIE 1491
Query: 340 QRFD 351
++FD
Sbjct: 1492 RQFD 1495
>Z48334-10|CAA88315.1| 1780|Caenorhabditis elegans Hypothetical
protein F10B5.7 protein.
Length = 1780
Score = 28.7 bits (61), Expect = 1.8
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = +1
Query: 166 PSNNKDGSTISE-LP-ENWDQTKDDNRSLFLNKSDKNDLEPYPLALSEEGNQDGYDQTVD 339
P NK G I + LP WD D R L L+K+D YP+A E + + +++
Sbjct: 1435 PKINKAGRCIGQSLPWVAWDALCDLRRQLMLDKNDAVLRGKYPIAARLE---EEIENSIE 1491
Query: 340 QRFD 351
++FD
Sbjct: 1492 RQFD 1495
>AF043706-2|AAB97604.2| 730|Caenorhabditis elegans Hypothetical
protein ZC123.1 protein.
Length = 730
Score = 27.9 bits (59), Expect = 3.1
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 6/80 (7%)
Frame = +2
Query: 137 RSLLSAQCRRL----RTTKMAVPSVNCQKIGI--KQKMITDLSS*TRVTKTIWNLTRLPS 298
R+ S CR+ + TK P ++CQ IG+ +Q T +S + KTI +
Sbjct: 225 RACPSCPCRKRLMLGKRTKRDAPGLHCQPIGLLGQQSPPTLIS---KPVKTIIKSKSRVA 281
Query: 299 AKKEIKMAMTKRLTNASTHH 358
K ++++TK+L S+ H
Sbjct: 282 GTKTSQVSVTKKLIEQSSDH 301
>AL032631-11|CAB63341.1| 975|Caenorhabditis elegans Hypothetical
protein Y106G6H.12 protein.
Length = 975
Score = 27.5 bits (58), Expect = 4.1
Identities = 25/85 (29%), Positives = 34/85 (40%)
Frame = +1
Query: 163 TPSNNKDGSTISELPENWDQTKDDNRSLFLNKSDKNDLEPYPLALSEEGNQDGYDQTVDQ 342
TP+N D S IS + + K+ +R L KS P P S Y T +
Sbjct: 156 TPTNQMDRSKISFVIKPQINLKNCSRELLSPKSSIFSSSPKPKETS-----PFYKTTPTK 210
Query: 343 RFDSPQSNGELGNLIMRPELYGEPP 417
F S N +L NL ++ PP
Sbjct: 211 TFSSTPKNLKLENLKSPEDIKSPPP 235
>Z82052-1|CAB04823.1| 300|Caenorhabditis elegans Hypothetical
protein T25E12.5 protein.
Length = 300
Score = 27.1 bits (57), Expect = 5.5
Identities = 16/66 (24%), Positives = 27/66 (40%)
Frame = +1
Query: 118 SLTAITAVLAVSAVPTPSNNKDGSTISELPENWDQTKDDNRSLFLNKSDKNDLEPYPLAL 297
SLT A+L+++ + D ++E NW +R F+ + YP A
Sbjct: 141 SLTVYRALLSLATSSGSFDGGDQGLLNEYFSNWRDLPSAHRLPFIYNMTAGEFYSYPAAY 200
Query: 298 SEEGNQ 315
+ G Q
Sbjct: 201 RKYGAQ 206
>U28928-6|AAA68338.1| 188|Caenorhabditis elegans Hypothetical
protein C44B7.7 protein.
Length = 188
Score = 27.1 bits (57), Expect = 5.5
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -1
Query: 295 GQAGKVPNRFCHSCSRREIGYHLLFDP 215
G K+PN + S +E GYH L P
Sbjct: 84 GCVWKMPNEYSDSLDEQEFGYHRLMVP 110
>Z93374-3|CAB07558.2| 363|Caenorhabditis elegans Hypothetical
protein C06C6.4 protein.
Length = 363
Score = 26.6 bits (56), Expect = 7.2
Identities = 20/85 (23%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Frame = +1
Query: 142 LAVSAVPTPSNNKDGSTISELPENWDQTKDDNRSLFLNKSDKNDLEPYPLALSEEGNQDG 321
L +S +P +++ STIS + W + +D L+ + D DL Y ++ + + +
Sbjct: 105 LPISPLPYHIVSRNNSTISYIVSTWGEVQDKRSVLYKKRFD--DLTYYEACVASKIDSEI 162
Query: 322 YDQTVDQRFDSPQSNGELG-NLIMR 393
+ F QS L N ++R
Sbjct: 163 MWNVCEYIFPQIQSLSNLDKNAVLR 187
>Z81575-4|CAB04630.1| 320|Caenorhabditis elegans Hypothetical
protein R08H2.4 protein.
Length = 320
Score = 26.6 bits (56), Expect = 7.2
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -3
Query: 152 LTARTAVIAVRENNNIVTVGQNSRW 78
L ++IA+ EN T+GQNS W
Sbjct: 101 LALGVSLIAIYENRFYATIGQNSIW 125
>Z73423-2|CAA97774.1| 290|Caenorhabditis elegans Hypothetical
protein C03A3.3 protein.
Length = 290
Score = 26.6 bits (56), Expect = 7.2
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -1
Query: 64 MNKSLKMWCSGGTPDAFVMW 5
MN MW G TPD+ V+W
Sbjct: 145 MNIVQVMWTPGHTPDSIVLW 164
>AF273815-1|AAG15164.1| 365|Caenorhabditis elegans nuclear receptor
NHR-63 protein.
Length = 365
Score = 26.6 bits (56), Expect = 7.2
Identities = 20/85 (23%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Frame = +1
Query: 142 LAVSAVPTPSNNKDGSTISELPENWDQTKDDNRSLFLNKSDKNDLEPYPLALSEEGNQDG 321
L +S +P +++ STIS + W + +D L+ + D DL Y ++ + + +
Sbjct: 107 LPISPLPYHIVSRNNSTISYIVSTWGEVQDKRSVLYKKRFD--DLTYYEACVASKIDSEI 164
Query: 322 YDQTVDQRFDSPQSNGELG-NLIMR 393
+ F QS L N ++R
Sbjct: 165 MWNVCEYIFPQIQSLSNLDKNAVLR 189
>Z82056-1|CAB04854.1| 325|Caenorhabditis elegans Hypothetical
protein T26H5.3 protein.
Length = 325
Score = 26.2 bits (55), Expect = 9.5
Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Frame = -3
Query: 185 PSLLFE-GVGTALTARTAVIAVRENNNIVTVGQNSRW 78
P L F GV TAV EN + GQNS+W
Sbjct: 90 PGLFFYLGVTFITGVTTAVFVTFENRFHILFGQNSKW 126
>Z70308-1|CAA94351.1| 213|Caenorhabditis elegans Hypothetical
protein F49E11.4 protein.
Length = 213
Score = 26.2 bits (55), Expect = 9.5
Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Frame = +2
Query: 293 PSAKKEIKMAMTKRLTNASTHHS---PMENSVILS*G 394
PSA K++ +K+LTNA+T + P +SV+++ G
Sbjct: 52 PSASMMRKISWSKKLTNAATKFAETCPKNHSVVMNTG 88
>AF098999-3|AAC68726.2| 445|Caenorhabditis elegans Hypothetical
protein W04C9.3 protein.
Length = 445
Score = 26.2 bits (55), Expect = 9.5
Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Frame = +1
Query: 124 TAITAVLAVSAVPTPSNNKDGSTISELP-ENWDQTKDDNRSLFLNKSDKNDLEPYPLALS 300
T +T V VP P +N G+T +P E W + N + + EP P ++
Sbjct: 276 TPLTQVPITGQVPMPFDNTIGNTFDGIPLEPWMKEPSPPTDDVANITSEG--EPMPRLIT 333
Query: 301 EE 306
EE
Sbjct: 334 EE 335
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,818,844
Number of Sequences: 27780
Number of extensions: 193974
Number of successful extensions: 666
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 666
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 683806592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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