Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0011
         (418 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   1.0  
AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding prote...    22   3.2  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        21   4.2  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    21   4.2  
DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein ...    21   5.6  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    20   9.7  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.4 bits (48), Expect = 1.0
 Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
 Frame = +1

Query: 160  PTPSNNKDGSTISELPENWDQTKDDNRSLFLNKSDKNDLEPYPLALSEEGNQDGYDQTVD 339
            P P   +   T+   P   D+ ++D+ S      D+    P PL++S  G++D  D T D
Sbjct: 1364 PVPERPERVPTVDLSPSPSDRGRNDDGS------DRLTSPPTPLSISRAGSRD-EDSTRD 1416

Query: 340  Q-RFDSPQSNGELGN 381
              + D      E+ N
Sbjct: 1417 STKLDRSSREREVHN 1431


>AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding protein
           ASP5 protein.
          Length = 143

 Score = 21.8 bits (44), Expect = 3.2
 Identities = 7/27 (25%), Positives = 15/27 (55%)
 Frame = +3

Query: 78  PSTILTDRDYVIIFPNRYYSGPCCQRS 158
           P  ++  ++ V +  N  Y+G  CQ++
Sbjct: 99  PEEVVIGKEIVAVCRNEEYTGDDCQKT 125


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = +1

Query: 109 LLFSLTAITAVLAVSAVPTPSNNKDGSTISELPENWD 219
           +L  L  I A+L      TP NNK   T+ E    W+
Sbjct: 15  VLLMLAPINALLLGFVQSTPDNNK---TVREFNVYWN 48


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = -2

Query: 306 FFAEGKRVRFQIVFVTLV 253
           FF+ GK+  +Q+ F+ +V
Sbjct: 2   FFSSGKQQVYQLFFIQIV 19


>DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein 5
           protein.
          Length = 104

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -1

Query: 283 KVPNRFCHSCSRREIG 236
           +V N  C+ C+ R+IG
Sbjct: 59  EVLNNHCNRCTSRQIG 74


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 20.2 bits (40), Expect = 9.7
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = +2

Query: 230 MITDLSS*TRVTKTIWNLTRLPSAKKEIKMAMTKRLTNAST 352
           MI  LS  T+    IWN+T       EI++       N +T
Sbjct: 149 MIESLSHTTQDLVFIWNMTDPLVVNPEIELPQLDISNNYTT 189


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,167
Number of Sequences: 438
Number of extensions: 2205
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10626762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)