Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0007
(808 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0702 - 31027908-31027958,31028062-31029311,31029665-310298... 31 0.82
02_02_0704 + 13095449-13095584,13095671-13095990,13096102-130964... 31 1.4
07_03_1577 - 27869596-27869682,27869769-27869869,27869956-278699... 30 2.5
07_03_0735 + 21075033-21075846,21077065-21077199,21077384-210775... 29 4.4
01_01_0829 + 6471032-6471870,6472490-6472685,6472772-6472956,647... 29 4.4
06_03_0355 + 19822110-19824491 29 5.8
04_03_0752 + 19300584-19301273,19301335-19301723,19302861-19303539 29 5.8
06_03_0165 - 17399535-17400178,17400378-17400522 28 7.6
02_05_0599 - 30251708-30251815,30251864-30251984,30252068-302522... 28 7.6
01_06_0241 - 27813076-27813622,27813695-27814125 28 7.6
>02_05_0702 - 31027908-31027958,31028062-31029311,31029665-31029842,
31029955-31030017,31031597-31031704,31031772-31031836,
31031928-31032015,31032104-31032157,31032234-31032380,
31033358-31033429,31034077-31034226,31034317-31034430,
31034762-31034875,31035925-31036077,31037437-31037529,
31038202-31038318,31038984-31039086,31039192-31039376,
31039448-31039522,31040451-31040534,31041547-31041588,
31041668-31041847,31042109-31042162,31042239-31042280,
31042869-31042967,31043040-31043174,31043325-31043427,
31045061-31045134,31045227-31045270,31045393-31045471,
31045592-31045705,31045842-31045946,31046027-31046161,
31046447-31046546,31046870-31046883,31046936-31047004,
31047079-31047182,31047299-31047347,31047931-31048023,
31048102-31048210,31048619-31048755,31048851-31048928,
31049015-31049104,31049402-31049467,31049546-31049638,
31049711-31049839,31050024-31050122,31051366-31051512,
31051605-31051910
Length = 2050
Score = 31.5 bits (68), Expect = 0.82
Identities = 33/136 (24%), Positives = 57/136 (41%), Gaps = 20/136 (14%)
Frame = +2
Query: 98 KDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQL 277
K L V LKS+++ +++ K+ + E K ++SL +E SSQ
Sbjct: 1426 KKLNDVEASLKSEIDRHRKI---NINIKRKLDASAKEKEELTKEKQSLSKQLEDLKSSQK 1482
Query: 278 KHTETQEKNPLPDKD--------AIEAEKEKNK------------FLNGIENFDPTKLKH 397
TE + + +KD +E E++ NK F I+N + + +
Sbjct: 1483 TTTENSNEQAIKEKDFRIQTLEKVLEKERDDNKKEKAFRRRNEKVFTTAIQNMNQERKQV 1542
Query: 398 TETCEKNPLPTKDVIE 445
E+ EK+ K+VIE
Sbjct: 1543 EESIEKHRQAVKEVIE 1558
>02_02_0704 +
13095449-13095584,13095671-13095990,13096102-13096423,
13096556-13096632,13096744-13097127
Length = 412
Score = 30.7 bits (66), Expect = 1.4
Identities = 26/90 (28%), Positives = 40/90 (44%)
Frame = +2
Query: 74 SVSDTPSLKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGI 253
S S TP+ KDLP L ++ G + + ++ LP++ A + G
Sbjct: 145 SPSPTPT-KDLPCKPVALNARKAG---GAFQPFEKEKRAELPASSTTAAASSTVVGDSGD 200
Query: 254 EKFDSSQLKHTETQEKNPLPDKDAIEAEKE 343
+ D KH ET + N DKDA + +KE
Sbjct: 201 KPTDDDTEKHMETDKDN---DKDAKDKDKE 227
>07_03_1577 -
27869596-27869682,27869769-27869869,27869956-27869995,
27870879-27870953
Length = 100
Score = 29.9 bits (64), Expect = 2.5
Identities = 10/25 (40%), Positives = 19/25 (76%)
Frame = +2
Query: 122 DLKSQLEGFNTSCLRDVDTNEKIVL 196
DL+S+L+ NT CL + + N+K+++
Sbjct: 54 DLQSKLDAVNTECLAEKEKNKKLII 78
>07_03_0735 +
21075033-21075846,21077065-21077199,21077384-21077517,
21077604-21077814,21078033-21078270,21078346-21078496,
21078593-21078931
Length = 673
Score = 29.1 bits (62), Expect = 4.4
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +2
Query: 185 KIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKN 304
K VLPS E++A ++ S GIE+ + + + Q+KN
Sbjct: 361 KGVLPSGEEIAVKRLSMSSGQGIEELKNELVLVAKLQQKN 400
>01_01_0829 +
6471032-6471870,6472490-6472685,6472772-6472956,
6473206-6473539,6473629-6473833,6474927-6475033,
6475117-6475269
Length = 672
Score = 29.1 bits (62), Expect = 4.4
Identities = 16/31 (51%), Positives = 19/31 (61%)
Frame = +3
Query: 84 TLPP*KTSPRSPQT*RVSSKASTPAVSVTST 176
TLPP + SP SP T SSK TP+ S S+
Sbjct: 31 TLPPGRLSPVSPLTHSSSSKLPTPSSSSGSS 61
>06_03_0355 + 19822110-19824491
Length = 793
Score = 28.7 bits (61), Expect = 5.8
Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Frame = +2
Query: 161 LRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTET---QEKNPLPDKDAIE 331
+ +V +++LP+ E+VATE + +E D+ L T +E +P+ D E
Sbjct: 203 VEEVSVTHEVMLPNYEEVATEGDGDTAMAAVEN-DAGSLAETVVMTHEEFVAVPEDDEEE 261
Query: 332 AEKEKNKFLNGI 367
A+ ++ G+
Sbjct: 262 ADGDEENDATGL 273
>04_03_0752 + 19300584-19301273,19301335-19301723,19302861-19303539
Length = 585
Score = 28.7 bits (61), Expect = 5.8
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 268 EPAEAHRDSGEEPASGQRRYRSGEGKEQ 351
+P A D E +G RR+RSG G++Q
Sbjct: 206 DPRAADDDHAEAARNGVRRWRSGSGQQQ 233
>06_03_0165 - 17399535-17400178,17400378-17400522
Length = 262
Score = 28.3 bits (60), Expect = 7.6
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +1
Query: 580 YNGNPAWAMATYSNPGFYSNPNDKSRLTPINSEWTP 687
++G W T G YS D +RLT I SE P
Sbjct: 221 FSGEYRWCYPTPVREGIYSLATDANRLTTIFSEENP 256
>02_05_0599 -
30251708-30251815,30251864-30251984,30252068-30252215,
30252303-30252480,30252587-30252625,30252704-30252799,
30252879-30253030,30253336-30253722,30253836-30253940,
30254083-30254098
Length = 449
Score = 28.3 bits (60), Expect = 7.6
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Frame = +1
Query: 295 GEEPASGQRRYRSGEGKEQIPERHRELR--SH*AEAHG-DVRKEPAP 426
GEEPA R+G G P +HRE + SH + +G ++R+ P
Sbjct: 6 GEEPAHDFLSLRAGGGSSSPPFQHREEQHSSHSSRGYGMEIRRSLRP 52
>01_06_0241 - 27813076-27813622,27813695-27814125
Length = 325
Score = 28.3 bits (60), Expect = 7.6
Identities = 13/56 (23%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = +1
Query: 268 EPAEAHRDSGEEPASGQRRYRSGEGKEQIPERHRELRS-H*AEAHGDVRKEPAPHK 432
EP H + ++ R +R+ ++ + HR RS H A + +V + H+
Sbjct: 23 EPEANHESANQQSHHSNRSHRTASRNAEVEQPHRSNRSHHTASRNAEVEQSHCSHR 78
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,480,044
Number of Sequences: 37544
Number of extensions: 452182
Number of successful extensions: 1379
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1326
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1378
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2197677108
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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