Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0006
         (552 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    29   0.46 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   0.60 
SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|c...    28   0.80 
SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|...    27   1.4  
SPAC8C9.12c |||iron ion transporter |Schizosaccharomyces pombe|c...    26   4.2  
SPBC3B9.10 |vti1||SNARE Vti1|Schizosaccharomyces pombe|chr 2|||M...    25   7.4  
SPBC216.01c ||SPBC713.13c|DNA damage response protein |Schizosac...    25   9.8  

>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 29.1 bits (62), Expect = 0.46
 Identities = 20/58 (34%), Positives = 27/58 (46%)
 Frame = -1

Query: 357 SSPDTPQPDTVRDTLAYIPDRSRYNDLFRTLNPLKARNTSDASDSAVGYSDATTTLTS 184
           S  +T  P  V  T++Y    S   D   T N   + ++   S S   YSD TTT+TS
Sbjct: 661 SLKETSSPAYVSSTVSYT---SSSVDSSSTYNSTGSSSSDSQSFSGTTYSDPTTTITS 715


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.7 bits (61), Expect = 0.60
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = -1

Query: 540 ESKVFPVMTILKLMRSRKTDKYLFKKND 457
           ES+VFP  TI+K + + +T +Y F  +D
Sbjct: 104 ESRVFPKPTIVKEITNERTKRYTFYDDD 131


>SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 488

 Score = 28.3 bits (60), Expect = 0.80
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -1

Query: 297 RSRYNDLFRTLNPLKARNTSDASDSAVGYSDATTTLTSLPEIR 169
           RSR   +FR ++P+K      A DS    S  T+  + L  +R
Sbjct: 443 RSRLKQIFRLIDPVKTMQFQQAEDSIRSKSTVTSATSLLNWVR 485


>SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 699

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = +2

Query: 179 GNDVKVVVASLYPTALSDASEVFRALSGFKVRNRSLYRDRSGMYANVS 322
           GN +   VA    +++ D ++VFR+L GFK       RD S     +S
Sbjct: 97  GNIISASVAPQRISSVIDYADVFRSLPGFKNIENGGNRDTSSRIEELS 144


>SPAC8C9.12c |||iron ion transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 303

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 16/67 (23%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
 Frame = +2

Query: 218 TALSDASEVFRALSGFKVRNRSLYRDRSGMYA---NVSRTVSGCGVSGELFWSFNSLIRI 388
           T +   + V R++SG  V +        G+Y+    +S  + G G S  +++S     + 
Sbjct: 45  TRMQMLNGVSRSVSGNIVNSVIKISSTEGVYSLWRGISSVIMGAGPSHAIYFSVLEFFKS 104

Query: 389 HFNSTPD 409
             N++PD
Sbjct: 105 KINASPD 111


>SPBC3B9.10 |vti1||SNARE Vti1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 214

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = -2

Query: 80  MRNNHRRHQLEKRLLKEQRVANDSK 6
           ++  +R  Q  +RLL+ QR+AN+++
Sbjct: 118 LQGTNRLEQSSQRLLESQRIANETE 142


>SPBC216.01c ||SPBC713.13c|DNA damage response protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 836

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 7/80 (8%)
 Frame = -1

Query: 315 LAYIPDRSRYNDLFRTLNPLKARNTSD---ASDSAVGYSDATTTLTSLP--EIRNL--WH 157
           L  +P    YN+ +R  +    RN +D     +    + D +  + + P  E+ N+    
Sbjct: 486 LLSLPGSYAYNNPYRNADG-NVRNKTDNIIGINFIENFYDNSFNMLAAPLLELENVSSLD 544

Query: 156 AHKLNKYQRIKGIFCFFFSI 97
             KL+ Y  +  +FC+FF I
Sbjct: 545 VKKLDMYMHLCELFCYFFRI 564


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,970,751
Number of Sequences: 5004
Number of extensions: 35473
Number of successful extensions: 83
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)