Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0006
         (552 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0039 - 40667598-40669880                                         28   5.7  
03_05_0258 - 22442527-22443927                                         27   7.5  

>01_07_0039 - 40667598-40669880
          Length = 760

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = -2

Query: 344 LHNLTQCVTR*HTYRTDRDITTCFEL*IRLKPETLQMHRTARS 216
           +HNL     R  ++R   D+ T FEL     PE LQ   T+ S
Sbjct: 458 IHNLLMFSHRIPSFRFTCDVGTVFELEHSAVPENLQYENTSAS 500


>03_05_0258 - 22442527-22443927
          Length = 466

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -1

Query: 183 LPEIRNLWH-AHKLNKYQRIKGIFCFFFSIFN 91
           LPE+ N WH   ++N YQ+ + +     S+FN
Sbjct: 275 LPEVANYWHQVIRINDYQKSRFVNRVVSSMFN 306


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,565,482
Number of Sequences: 37544
Number of extensions: 193367
Number of successful extensions: 434
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 434
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)