Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0006
         (552 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014134-1516|AAN10669.1| 1005|Drosophila melanogaster CG31897-P...    31   1.4  
BT029975-1|ABM92849.1|  237|Drosophila melanogaster IP18234p pro...    29   3.2  
AY058552-1|AAL13781.1|  508|Drosophila melanogaster LD24726p pro...    29   3.2  
AE014296-3711|AAF51855.3|  508|Drosophila melanogaster CG11241-P...    29   3.2  
AY060437-1|AAL25476.1|  276|Drosophila melanogaster LD46538p pro...    29   5.5  
AE014296-1724|AAS65049.1|  276|Drosophila melanogaster CG18177-P...    29   5.5  
AY048675-1|AAL06601.1|  927|Drosophila melanogaster myosin phosp...    28   7.3  

>AE014134-1516|AAN10669.1| 1005|Drosophila melanogaster CG31897-PA
           protein.
          Length = 1005

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = -1

Query: 321 DTLAYIPDRSRYNDLFRTLNPLKARNTSDASDSAVGYSDATTTLTSLPEIRNL 163
           ++LA     S+Y D+   LNP+   + S  S  +VG     + L   P +R+L
Sbjct: 529 ESLAKQMSMSKYFDIKTNLNPVSPSHLSQTSSVSVGKLKVNSALLPKPSVRSL 581


>BT029975-1|ABM92849.1|  237|Drosophila melanogaster IP18234p
           protein.
          Length = 237

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 15/59 (25%), Positives = 27/59 (45%)
 Frame = +2

Query: 200 VASLYPTALSDASEVFRALSGFKVRNRSLYRDRSGMYANVSRTVSGCGVSGELFWSFNS 376
           VA+++  ++       +   G+  R  +L R   G++       +G G +GE FW F S
Sbjct: 11  VAAMFAESIQGVGGTVQFPKGYLKRAAALVRANGGLFV-ADEVQTGFGRTGEHFWGFES 68


>AY058552-1|AAL13781.1|  508|Drosophila melanogaster LD24726p
           protein.
          Length = 508

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 15/59 (25%), Positives = 27/59 (45%)
 Frame = +2

Query: 200 VASLYPTALSDASEVFRALSGFKVRNRSLYRDRSGMYANVSRTVSGCGVSGELFWSFNS 376
           VA+++  ++       +   G+  R  +L R   G++       +G G +GE FW F S
Sbjct: 277 VAAMFAESIQGVGGTVQFPKGYLKRAAALVRANGGLFV-ADEVQTGFGRTGEHFWGFES 334


>AE014296-3711|AAF51855.3|  508|Drosophila melanogaster CG11241-PA
           protein.
          Length = 508

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 15/59 (25%), Positives = 27/59 (45%)
 Frame = +2

Query: 200 VASLYPTALSDASEVFRALSGFKVRNRSLYRDRSGMYANVSRTVSGCGVSGELFWSFNS 376
           VA+++  ++       +   G+  R  +L R   G++       +G G +GE FW F S
Sbjct: 277 VAAMFAESIQGVGGTVQFPKGYLKRAAALVRANGGLFV-ADEVQTGFGRTGEHFWGFES 334


>AY060437-1|AAL25476.1|  276|Drosophila melanogaster LD46538p
           protein.
          Length = 276

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = +2

Query: 224 LSDASEVFRALSGFKVRNRSLYRDRSGMYANVSRTVS 334
           +SD+ E++  LSGF ++++ +  D  G  A+V   +S
Sbjct: 106 MSDSDELYTRLSGFPMQDKGILPDSMGRSADVGYILS 142


>AE014296-1724|AAS65049.1|  276|Drosophila melanogaster CG18177-PA,
           isoform A protein.
          Length = 276

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = +2

Query: 224 LSDASEVFRALSGFKVRNRSLYRDRSGMYANVSRTVS 334
           +SD+ E++  LSGF ++++ +  D  G  A+V   +S
Sbjct: 106 MSDSDELYTRLSGFPMQDKGILPDSMGRSADVGYILS 142


>AY048675-1|AAL06601.1|  927|Drosophila melanogaster myosin
           phosphatase DMBS-L protein.
          Length = 927

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -1

Query: 300 DRSRYNDLFRTLNPLKARNTSDASDSAVGYSDATTTLTSLP 178
           ++S  N+   + N     N ++ SD  +GY+  TTT TS P
Sbjct: 438 NKSNNNNNLSSNNYHNNNNNNNKSDLLLGYAAGTTTTTSTP 478


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,137,353
Number of Sequences: 53049
Number of extensions: 355378
Number of successful extensions: 952
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 943
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 952
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2110522698
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)