Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0006
         (552 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    24   0.89 
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    22   4.8  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   6.3  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   8.3  

>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 24.2 bits (50), Expect = 0.89
 Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
 Frame = +2

Query: 158 CHRFLISGNDVKVVVASLYPTALSDASEVFRALSG--FKVRNRSLYRDRSGMYANVSRTV 331
           C + +I+G  V    A  YP     A+ V  A+    F + +R ++R     Y N+  T 
Sbjct: 312 CVQAMIAGIVVISAGADAYPPL---AAIVLGAIGSIVFYIISRYVFRSALEDYCNIVATH 368

Query: 332 SGCGVSGELFWSF 370
             CG+ G +   F
Sbjct: 369 LVCGILGSILVPF 381


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = -1

Query: 345 TPQPDTVRDTLAYIP 301
           TP+PD + + L ++P
Sbjct: 331 TPEPDCIHELLGHMP 345


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = -2

Query: 431 NTYKLTSNQECY*NGSVLNY*NSRKVHPTLHNLTQCV 321
           NT +L   Q    NG V+++ N    H     L +C+
Sbjct: 436 NTERLQVGQYVTVNGDVVSHLNISSTHTNDGGLYKCI 472


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 11/23 (47%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
 Frame = -1

Query: 342 PQ-PDTVRDTLAYIPDRSRYNDL 277
           PQ PD +R+ L  IPD    N L
Sbjct: 379 PQHPDILRELLKKIPDLRTLNTL 401


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,171
Number of Sequences: 438
Number of extensions: 2388
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15827139
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)