Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0004
         (374 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    25   0.25 
AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    24   0.44 
AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    24   0.44 
X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.          21   3.1  
AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.           21   3.1  
EF592536-1|ABQ95982.1|  598|Tribolium castaneum beta-N-acetylglu...    21   4.1  
AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    20   7.2  

>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 25.0 bits (52), Expect = 0.25
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -2

Query: 355 DRSRSTPYYRLFPANSRRP 299
           + S + PYY+L  AN++RP
Sbjct: 439 ENSPTKPYYKLKTANNKRP 457


>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 24.2 bits (50), Expect = 0.44
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +3

Query: 132 QTGHARGHRPPHSLRAGND 188
           Q  H   H PPHS+ A N+
Sbjct: 48  QMWHHHSHMPPHSVFAANN 66


>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 24.2 bits (50), Expect = 0.44
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +3

Query: 132 QTGHARGHRPPHSLRAGND 188
           Q  H   H PPHS+ A N+
Sbjct: 48  QMWHHHSHMPPHSVFAANN 66


>X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.
          Length = 251

 Score = 21.4 bits (43), Expect = 3.1
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +2

Query: 125 PLANWSCPGASTPTLTSS 178
           P ++W+CP  + P   SS
Sbjct: 48  PPSDWNCPQYNAPPYMSS 65


>AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.
          Length = 246

 Score = 21.4 bits (43), Expect = 3.1
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +2

Query: 125 PLANWSCPGASTPTLTSS 178
           P ++W+CP  + P   SS
Sbjct: 39  PPSDWNCPQYNAPPYMSS 56


>EF592536-1|ABQ95982.1|  598|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG1 protein.
          Length = 598

 Score = 21.0 bits (42), Expect = 4.1
 Identities = 5/14 (35%), Positives = 9/14 (64%)
 Frame = +3

Query: 81  WPQPHHSWRHTDHR 122
           W +P ++WR  + R
Sbjct: 547 WSEPTNTWREAEQR 560



 Score = 19.8 bits (39), Expect = 9.5
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 277 EKGQSLLEAYANWREKADN 333
           +KGQ L    A W E+AD+
Sbjct: 510 KKGQVLGAEAALWTEQADS 528


>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 20.2 bits (40), Expect = 7.2
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +3

Query: 144 ARGHRPPHSLRAGNDG 191
           A  HRPPH    G  G
Sbjct: 210 AMAHRPPHFAFPGAPG 225


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,013
Number of Sequences: 336
Number of extensions: 1775
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  7828090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)